question_id stringlengths 22 31 | question_type stringclasses 1
value | description stringlengths 30 130 | content dict | environment dict | answer dict | test dict | scoring_config dict |
|---|---|---|---|---|---|---|---|
MSB_einsteintoolkit_Cactus_pr1 | multi_swe_bench | Add missing LinearExtrapBnd.c in CactusExamples/SampleBoundary (einsteintoolkit/Cactus#1) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 1,
"issue_title": "Add missing LinearExtrapBnd.c in CactusExamples/SampleBoundary",
"issue_body": "This PR adds the missing source file LinearExtrapBnd.c to complete the CactusExamples/SampleBoundary thorn implementation.",
"base_commit": "HEAD",
... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-1",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/CactusExamples/SampleBoundary/src/LinearExtrapBnd.c b/arrangements/CactusExamples/SampleBoundary/src/LinearExtrapBnd.c\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/CactusExamples/SampleBoundary/src/LinearExtrapBnd.c\n@@ -0,0 +1,246 @@\n+ /*... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,1 @@\n+wavetoyc",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr10 | multi_swe_bench | Add missing GRHydro_Marquina.F90 in EinsteinEvolve/GRHydro (einsteintoolkit/Cactus#10) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 10,
"issue_title": "Add missing GRHydro_Marquina.F90 in EinsteinEvolve/GRHydro",
"issue_body": "This PR adds the missing source file GRHydro_Marquina.F90 to complete the EinsteinEvolve/GRHydro thorn implementation.",
"base_commit": "HEAD",
"resolv... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-10",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Marquina.F90 b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Marquina.F90\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Marquina.F90\n@@ -0,0 +1,459 @@\n+ /*@@\n+ @fi... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,10 @@\n+GRHydro_test_shock\n+GRHydro_test_shock_mp5\n+GRHydro_test_shock_ppm\n+GRHydro_test_tov_ppm_ML\n+GRHydro_test_tov_ppm_ML_disable_internal_excision\n+GRHydro... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr11 | multi_swe_bench | Add missing GRHydro_PPM.h in EinsteinEvolve/GRHydro (einsteintoolkit/Cactus#11) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 11,
"issue_title": "Add missing GRHydro_PPM.h in EinsteinEvolve/GRHydro",
"issue_body": "This PR adds the missing source file GRHydro_PPM.h to complete the EinsteinEvolve/GRHydro thorn implementation.",
"base_commit": "HEAD",
"resolved_issues": [
... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-11",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_PPM.h b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_PPM.h\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_PPM.h\n@@ -0,0 +1,56 @@\n+#include <assert.h>\n+#include <math.... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,10 @@\n+GRHydro_test_shock\n+GRHydro_test_shock_mp5\n+GRHydro_test_shock_ppm\n+GRHydro_test_tov_ppm_ML\n+GRHydro_test_tov_ppm_ML_disable_internal_excision\n+GRHydro... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr12 | multi_swe_bench | Add missing GRHydro_LastMoLPostStep.c in EinsteinEvolve/GRHydro (einsteintoolkit/Cactus#12) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 12,
"issue_title": "Add missing GRHydro_LastMoLPostStep.c in EinsteinEvolve/GRHydro",
"issue_body": "This PR adds the missing source file GRHydro_LastMoLPostStep.c to complete the EinsteinEvolve/GRHydro thorn implementation.",
"base_commit": "HEAD",... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-12",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_LastMoLPostStep.c b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_LastMoLPostStep.c\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_LastMoLPostStep.c\n@@ -0,0 +1,39 @@\n+/... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,10 @@\n+GRHydro_test_shock\n+GRHydro_test_shock_mp5\n+GRHydro_test_shock_ppm\n+GRHydro_test_tov_ppm_ML\n+GRHydro_test_tov_ppm_ML_disable_internal_excision\n+GRHydro... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr13 | multi_swe_bench | Add missing GRHydro_FluxSplit.F90 in EinsteinEvolve/GRHydro (einsteintoolkit/Cactus#13) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 13,
"issue_title": "Add missing GRHydro_FluxSplit.F90 in EinsteinEvolve/GRHydro",
"issue_body": "This PR adds the missing source file GRHydro_FluxSplit.F90 to complete the EinsteinEvolve/GRHydro thorn implementation.",
"base_commit": "HEAD",
"reso... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-13",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_FluxSplit.F90 b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_FluxSplit.F90\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_FluxSplit.F90\n@@ -0,0 +1,869 @@\n+ /*@@\n+ @... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,10 @@\n+GRHydro_test_shock\n+GRHydro_test_shock_mp5\n+GRHydro_test_shock_ppm\n+GRHydro_test_tov_ppm_ML\n+GRHydro_test_tov_ppm_ML_disable_internal_excision\n+GRHydro... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr14 | multi_swe_bench | Add missing GRHydro_HLLEM.F90 in EinsteinEvolve/GRHydro (einsteintoolkit/Cactus#14) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 14,
"issue_title": "Add missing GRHydro_HLLEM.F90 in EinsteinEvolve/GRHydro",
"issue_body": "This PR adds the missing source file GRHydro_HLLEM.F90 to complete the EinsteinEvolve/GRHydro thorn implementation.",
"base_commit": "HEAD",
"resolved_iss... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-14",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_HLLEM.F90 b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_HLLEM.F90\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_HLLEM.F90\n@@ -0,0 +1,823 @@\n+ /*@@\n+ @file GR... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,10 @@\n+GRHydro_test_shock\n+GRHydro_test_shock_mp5\n+GRHydro_test_shock_ppm\n+GRHydro_test_tov_ppm_ML\n+GRHydro_test_tov_ppm_ML_disable_internal_excision\n+GRHydro... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr15 | multi_swe_bench | Add missing GRHydro_Tmunu.F90 in EinsteinEvolve/GRHydro (einsteintoolkit/Cactus#15) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 15,
"issue_title": "Add missing GRHydro_Tmunu.F90 in EinsteinEvolve/GRHydro",
"issue_body": "This PR adds the missing source file GRHydro_Tmunu.F90 to complete the EinsteinEvolve/GRHydro thorn implementation.",
"base_commit": "HEAD",
"resolved_iss... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-15",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Tmunu.F90 b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Tmunu.F90\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Tmunu.F90\n@@ -0,0 +1,159 @@\n+ /*@@\n+ @file GR... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,10 @@\n+GRHydro_test_shock\n+GRHydro_test_shock_mp5\n+GRHydro_test_shock_ppm\n+GRHydro_test_tov_ppm_ML\n+GRHydro_test_tov_ppm_ML_disable_internal_excision\n+GRHydro... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr16 | multi_swe_bench | Add missing GRHydro_TmunuM.F90 in EinsteinEvolve/GRHydro (einsteintoolkit/Cactus#16) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 16,
"issue_title": "Add missing GRHydro_TmunuM.F90 in EinsteinEvolve/GRHydro",
"issue_body": "This PR adds the missing source file GRHydro_TmunuM.F90 to complete the EinsteinEvolve/GRHydro thorn implementation.",
"base_commit": "HEAD",
"resolved_i... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-16",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_TmunuM.F90 b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_TmunuM.F90\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_TmunuM.F90\n@@ -0,0 +1,167 @@\n+ /*@@\n+ @file ... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,10 @@\n+GRHydro_test_shock\n+GRHydro_test_shock_mp5\n+GRHydro_test_shock_ppm\n+GRHydro_test_tov_ppm_ML\n+GRHydro_test_tov_ppm_ML_disable_internal_excision\n+GRHydro... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr17 | multi_swe_bench | Add missing GRHydro_Minima.cc in EinsteinEvolve/GRHydro (einsteintoolkit/Cactus#17) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 17,
"issue_title": "Add missing GRHydro_Minima.cc in EinsteinEvolve/GRHydro",
"issue_body": "This PR adds the missing source file GRHydro_Minima.cc to complete the EinsteinEvolve/GRHydro thorn implementation.",
"base_commit": "HEAD",
"resolved_iss... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-17",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Minima.cc b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Minima.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Minima.cc\n@@ -0,0 +1,175 @@\n+ /*@@\n+ @file GR... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,10 @@\n+GRHydro_test_shock\n+GRHydro_test_shock_mp5\n+GRHydro_test_shock_ppm\n+GRHydro_test_tov_ppm_ML\n+GRHydro_test_tov_ppm_ML_disable_internal_excision\n+GRHydro... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr18 | multi_swe_bench | Add missing GRHydro_Source.cc in EinsteinEvolve/GRHydro (einsteintoolkit/Cactus#18) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 18,
"issue_title": "Add missing GRHydro_Source.cc in EinsteinEvolve/GRHydro",
"issue_body": "This PR adds the missing source file GRHydro_Source.cc to complete the EinsteinEvolve/GRHydro thorn implementation.",
"base_commit": "HEAD",
"resolved_iss... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-18",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Source.cc b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Source.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Source.cc\n@@ -0,0 +1,709 @@\n+ /*@@\n+ @file GR... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,10 @@\n+GRHydro_test_shock\n+GRHydro_test_shock_mp5\n+GRHydro_test_shock_ppm\n+GRHydro_test_tov_ppm_ML\n+GRHydro_test_tov_ppm_ML_disable_internal_excision\n+GRHydro... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr19 | multi_swe_bench | Add missing GRHydro_RiemannSolveAM.F90 in EinsteinEvolve/GRHydro (einsteintoolkit/Cactus#19) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 19,
"issue_title": "Add missing GRHydro_RiemannSolveAM.F90 in EinsteinEvolve/GRHydro",
"issue_body": "This PR adds the missing source file GRHydro_RiemannSolveAM.F90 to complete the EinsteinEvolve/GRHydro thorn implementation.",
"base_commit": "HEAD... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-19",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_RiemannSolveAM.F90 b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_RiemannSolveAM.F90\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_RiemannSolveAM.F90\n@@ -0,0 +1,142 @@... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,10 @@\n+GRHydro_test_shock\n+GRHydro_test_shock_mp5\n+GRHydro_test_shock_ppm\n+GRHydro_test_tov_ppm_ML\n+GRHydro_test_tov_ppm_ML_disable_internal_excision\n+GRHydro... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr2 | multi_swe_bench | Add missing WaveMoLRegister.c in CactusExamples/WaveMoL (einsteintoolkit/Cactus#2) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 2,
"issue_title": "Add missing WaveMoLRegister.c in CactusExamples/WaveMoL",
"issue_body": "This PR adds the missing source file WaveMoLRegister.c to complete the CactusExamples/WaveMoL thorn implementation.",
"base_commit": "HEAD",
"resolved_issu... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-2",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/CactusExamples/WaveMoL/src/WaveMoLRegister.c b/arrangements/CactusExamples/WaveMoL/src/WaveMoLRegister.c\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/CactusExamples/WaveMoL/src/WaveMoLRegister.c\n@@ -0,0 +1,93 @@\n+ /*@@\n+ @file Wav... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,1 @@\n+gaussian",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr20 | multi_swe_bench | Add missing gauge.F in EinsteinInitialData/Exact (einsteintoolkit/Cactus#20) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 20,
"issue_title": "Add missing gauge.F in EinsteinInitialData/Exact",
"issue_body": "This PR adds the missing source file gauge.F to complete the EinsteinInitialData/Exact thorn implementation.",
"base_commit": "HEAD",
"resolved_issues": [
{
... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-20",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinInitialData/Exact/src/gauge.F b/arrangements/EinsteinInitialData/Exact/src/gauge.F\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinInitialData/Exact/src/gauge.F\n@@ -0,0 +1,187 @@\n+C This routine sets the lapse and/or shif... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,2 @@\n+Schwarzschild_EF\n+bowl-init",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr21 | multi_swe_bench | Add missing metrics/de_Sitter.F in EinsteinInitialData/Exact (einsteintoolkit/Cactus#21) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 21,
"issue_title": "Add missing metrics/de_Sitter.F in EinsteinInitialData/Exact",
"issue_body": "This PR adds the missing source file metrics/de_Sitter.F to complete the EinsteinInitialData/Exact thorn implementation.",
"base_commit": "HEAD",
"re... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-21",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinInitialData/Exact/src/metrics/de_Sitter.F b/arrangements/EinsteinInitialData/Exact/src/metrics/de_Sitter.F\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinInitialData/Exact/src/metrics/de_Sitter.F\n@@ -0,0 +1,79 @@\n+C Einstein... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,2 @@\n+Schwarzschild_EF\n+bowl-init",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr22 | multi_swe_bench | Add missing metrics/Schwarzschild_EF.F in EinsteinInitialData/Exact (einsteintoolkit/Cactus#22) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 22,
"issue_title": "Add missing metrics/Schwarzschild_EF.F in EinsteinInitialData/Exact",
"issue_body": "This PR adds the missing source file metrics/Schwarzschild_EF.F to complete the EinsteinInitialData/Exact thorn implementation.",
"base_commit":... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-22",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinInitialData/Exact/src/metrics/Schwarzschild_EF.F b/arrangements/EinsteinInitialData/Exact/src/metrics/Schwarzschild_EF.F\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinInitialData/Exact/src/metrics/Schwarzschild_EF.F\n@@ -0,0 ... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,2 @@\n+Schwarzschild_EF\n+bowl-init",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr23 | multi_swe_bench | Add missing Misner_standard.c in EinsteinInitialData/IDAnalyticBH (einsteintoolkit/Cactus#23) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 23,
"issue_title": "Add missing Misner_standard.c in EinsteinInitialData/IDAnalyticBH",
"issue_body": "This PR adds the missing source file Misner_standard.c to complete the EinsteinInitialData/IDAnalyticBH thorn implementation.",
"base_commit": "HE... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-23",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinInitialData/IDAnalyticBH/src/Misner_standard.c b/arrangements/EinsteinInitialData/IDAnalyticBH/src/Misner_standard.c\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinInitialData/IDAnalyticBH/src/Misner_standard.c\n@@ -0,0 +1,284... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,3 @@\n+kerr\n+test_bl\n+test_misner",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr24 | multi_swe_bench | Add missing BrillLindquist.c in EinsteinInitialData/IDAnalyticBH (einsteintoolkit/Cactus#24) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 24,
"issue_title": "Add missing BrillLindquist.c in EinsteinInitialData/IDAnalyticBH",
"issue_body": "This PR adds the missing source file BrillLindquist.c to complete the EinsteinInitialData/IDAnalyticBH thorn implementation.",
"base_commit": "HEAD... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-24",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinInitialData/IDAnalyticBH/src/BrillLindquist.c b/arrangements/EinsteinInitialData/IDAnalyticBH/src/BrillLindquist.c\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinInitialData/IDAnalyticBH/src/BrillLindquist.c\n@@ -0,0 +1,241 @@... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,3 @@\n+kerr\n+test_bl\n+test_misner",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr25 | multi_swe_bench | Add missing CarpetParamCheck.cc in Carpet/Carpet (einsteintoolkit/Cactus#25) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 25,
"issue_title": "Add missing CarpetParamCheck.cc in Carpet/Carpet",
"issue_body": "This PR adds the missing source file CarpetParamCheck.cc to complete the Carpet/Carpet thorn implementation.",
"base_commit": "HEAD",
"resolved_issues": [
{
... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-25",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/Carpet/Carpet/src/CarpetParamCheck.cc b/arrangements/Carpet/Carpet/src/CarpetParamCheck.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/Carpet/Carpet/src/CarpetParamCheck.cc\n@@ -0,0 +1,127 @@\n+#include <cassert>\n+#include <cstdlib>\n+\n+... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,2 @@\n+64k2\n+test_restrict_sync",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr26 | multi_swe_bench | Add missing GaugeWave_error.cc in EinsteinExact/GaugeWave (einsteintoolkit/Cactus#26) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 26,
"issue_title": "Add missing GaugeWave_error.cc in EinsteinExact/GaugeWave",
"issue_body": "This PR adds the missing source file GaugeWave_error.cc to complete the EinsteinExact/GaugeWave thorn implementation.",
"base_commit": "HEAD",
"resolved... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-26",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinExact/GaugeWave/src/GaugeWave_error.cc b/arrangements/EinsteinExact/GaugeWave/src/GaugeWave_error.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinExact/GaugeWave/src/GaugeWave_error.cc\n@@ -0,0 +1,2080 @@\n+/* File produced... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,7 @@\n+GaugeWave\n+KS-tilted-EE\n+KerrSchild\n+Minkowski\n+ModifiedSchwarzschildBL\n+ShiftedGaugeWave\n+Vaidya2",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr27 | multi_swe_bench | Add missing KerrSchild_error.cc in EinsteinExact/KerrSchild (einsteintoolkit/Cactus#27) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 27,
"issue_title": "Add missing KerrSchild_error.cc in EinsteinExact/KerrSchild",
"issue_body": "This PR adds the missing source file KerrSchild_error.cc to complete the EinsteinExact/KerrSchild thorn implementation.",
"base_commit": "HEAD",
"reso... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-27",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinExact/KerrSchild/src/KerrSchild_error.cc b/arrangements/EinsteinExact/KerrSchild/src/KerrSchild_error.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinExact/KerrSchild/src/KerrSchild_error.cc\n@@ -0,0 +1,2379 @@\n+/* File pr... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,7 @@\n+GaugeWave\n+KS-tilted-EE\n+KerrSchild\n+Minkowski\n+ModifiedSchwarzschildBL\n+ShiftedGaugeWave\n+Vaidya2",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr28 | multi_swe_bench | Add missing KerrSchild_initial.cc in EinsteinExact/KerrSchild (einsteintoolkit/Cactus#28) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 28,
"issue_title": "Add missing KerrSchild_initial.cc in EinsteinExact/KerrSchild",
"issue_body": "This PR adds the missing source file KerrSchild_initial.cc to complete the EinsteinExact/KerrSchild thorn implementation.",
"base_commit": "HEAD",
"... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-28",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinExact/KerrSchild/src/KerrSchild_initial.cc b/arrangements/EinsteinExact/KerrSchild/src/KerrSchild_initial.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinExact/KerrSchild/src/KerrSchild_initial.cc\n@@ -0,0 +1,2349 @@\n+/* F... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,7 @@\n+GaugeWave\n+KS-tilted-EE\n+KerrSchild\n+Minkowski\n+ModifiedSchwarzschildBL\n+ShiftedGaugeWave\n+Vaidya2",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr29 | multi_swe_bench | Add missing KerrSchild_exact.cc in EinsteinExact/KerrSchild (einsteintoolkit/Cactus#29) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 29,
"issue_title": "Add missing KerrSchild_exact.cc in EinsteinExact/KerrSchild",
"issue_body": "This PR adds the missing source file KerrSchild_exact.cc to complete the EinsteinExact/KerrSchild thorn implementation.",
"base_commit": "HEAD",
"reso... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-29",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinExact/KerrSchild/src/KerrSchild_exact.cc b/arrangements/EinsteinExact/KerrSchild/src/KerrSchild_exact.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinExact/KerrSchild/src/KerrSchild_exact.cc\n@@ -0,0 +1,2396 @@\n+/* File pr... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,7 @@\n+GaugeWave\n+KS-tilted-EE\n+KerrSchild\n+Minkowski\n+ModifiedSchwarzschildBL\n+ShiftedGaugeWave\n+Vaidya2",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr3 | multi_swe_bench | Add missing Boundary.c in CactusWave/WaveToyExtra (einsteintoolkit/Cactus#3) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 3,
"issue_title": "Add missing Boundary.c in CactusWave/WaveToyExtra",
"issue_body": "This PR adds the missing source file Boundary.c to complete the CactusWave/WaveToyExtra thorn implementation.",
"base_commit": "HEAD",
"resolved_issues": [
{... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-3",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/CactusWave/WaveToyExtra/src/Boundary.c b/arrangements/CactusWave/WaveToyExtra/src/Boundary.c\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/CactusWave/WaveToyExtra/src/Boundary.c\n@@ -0,0 +1,106 @@\n+/*@@\n+ @file Boundary.c\n+ @date... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,1 @@\n+test_custom",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr30 | multi_swe_bench | Add missing KerrSchild_always.cc in EinsteinExact/KerrSchild (einsteintoolkit/Cactus#30) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 30,
"issue_title": "Add missing KerrSchild_always.cc in EinsteinExact/KerrSchild",
"issue_body": "This PR adds the missing source file KerrSchild_always.cc to complete the EinsteinExact/KerrSchild thorn implementation.",
"base_commit": "HEAD",
"re... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-30",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinExact/KerrSchild/src/KerrSchild_always.cc b/arrangements/EinsteinExact/KerrSchild/src/KerrSchild_always.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinExact/KerrSchild/src/KerrSchild_always.cc\n@@ -0,0 +1,2349 @@\n+/* File... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,7 @@\n+GaugeWave\n+KS-tilted-EE\n+KerrSchild\n+Minkowski\n+ModifiedSchwarzschildBL\n+ShiftedGaugeWave\n+Vaidya2",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr31 | multi_swe_bench | Add missing Minkowski_initial.cc in EinsteinExact/Minkowski (einsteintoolkit/Cactus#31) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 31,
"issue_title": "Add missing Minkowski_initial.cc in EinsteinExact/Minkowski",
"issue_body": "This PR adds the missing source file Minkowski_initial.cc to complete the EinsteinExact/Minkowski thorn implementation.",
"base_commit": "HEAD",
"reso... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-31",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinExact/Minkowski/src/Minkowski_initial.cc b/arrangements/EinsteinExact/Minkowski/src/Minkowski_initial.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinExact/Minkowski/src/Minkowski_initial.cc\n@@ -0,0 +1,2021 @@\n+/* File pr... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,7 @@\n+GaugeWave\n+KS-tilted-EE\n+KerrSchild\n+Minkowski\n+ModifiedSchwarzschildBL\n+ShiftedGaugeWave\n+Vaidya2",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr32 | multi_swe_bench | Add missing Minkowski_always.cc in EinsteinExact/Minkowski (einsteintoolkit/Cactus#32) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 32,
"issue_title": "Add missing Minkowski_always.cc in EinsteinExact/Minkowski",
"issue_body": "This PR adds the missing source file Minkowski_always.cc to complete the EinsteinExact/Minkowski thorn implementation.",
"base_commit": "HEAD",
"resolv... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-32",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinExact/Minkowski/src/Minkowski_always.cc b/arrangements/EinsteinExact/Minkowski/src/Minkowski_always.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinExact/Minkowski/src/Minkowski_always.cc\n@@ -0,0 +1,2021 @@\n+/* File produ... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,7 @@\n+GaugeWave\n+KS-tilted-EE\n+KerrSchild\n+Minkowski\n+ModifiedSchwarzschildBL\n+ShiftedGaugeWave\n+Vaidya2",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr33 | multi_swe_bench | Add missing Minkowski_error.cc in EinsteinExact/Minkowski (einsteintoolkit/Cactus#33) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 33,
"issue_title": "Add missing Minkowski_error.cc in EinsteinExact/Minkowski",
"issue_body": "This PR adds the missing source file Minkowski_error.cc to complete the EinsteinExact/Minkowski thorn implementation.",
"base_commit": "HEAD",
"resolved... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-33",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinExact/Minkowski/src/Minkowski_error.cc b/arrangements/EinsteinExact/Minkowski/src/Minkowski_error.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinExact/Minkowski/src/Minkowski_error.cc\n@@ -0,0 +1,2048 @@\n+/* File produced... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,7 @@\n+GaugeWave\n+KS-tilted-EE\n+KerrSchild\n+Minkowski\n+ModifiedSchwarzschildBL\n+ShiftedGaugeWave\n+Vaidya2",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr34 | multi_swe_bench | Add missing ModifiedSchwarzschildBL_error.cc in EinsteinExact/ModifiedSchwarzschildBL (einsteintoolkit/Cactus#34) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 34,
"issue_title": "Add missing ModifiedSchwarzschildBL_error.cc in EinsteinExact/ModifiedSchwarzschildBL",
"issue_body": "This PR adds the missing source file ModifiedSchwarzschildBL_error.cc to complete the EinsteinExact/ModifiedSchwarzschildBL thor... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-34",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinExact/ModifiedSchwarzschildBL/src/ModifiedSchwarzschildBL_error.cc b/arrangements/EinsteinExact/ModifiedSchwarzschildBL/src/ModifiedSchwarzschildBL_error.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinExact/ModifiedSchwarzs... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,7 @@\n+GaugeWave\n+KS-tilted-EE\n+KerrSchild\n+Minkowski\n+ModifiedSchwarzschildBL\n+ShiftedGaugeWave\n+Vaidya2",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr35 | multi_swe_bench | Add missing ShiftedGaugeWave_error.cc in EinsteinExact/ShiftedGaugeWave (einsteintoolkit/Cactus#35) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 35,
"issue_title": "Add missing ShiftedGaugeWave_error.cc in EinsteinExact/ShiftedGaugeWave",
"issue_body": "This PR adds the missing source file ShiftedGaugeWave_error.cc to complete the EinsteinExact/ShiftedGaugeWave thorn implementation.",
"base_... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-35",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinExact/ShiftedGaugeWave/src/ShiftedGaugeWave_error.cc b/arrangements/EinsteinExact/ShiftedGaugeWave/src/ShiftedGaugeWave_error.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinExact/ShiftedGaugeWave/src/ShiftedGaugeWave_error.... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,7 @@\n+GaugeWave\n+KS-tilted-EE\n+KerrSchild\n+Minkowski\n+ModifiedSchwarzschildBL\n+ShiftedGaugeWave\n+Vaidya2",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr36 | multi_swe_bench | Add missing Vaidya2_error.cc in EinsteinExact/Vaidya2 (einsteintoolkit/Cactus#36) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 36,
"issue_title": "Add missing Vaidya2_error.cc in EinsteinExact/Vaidya2",
"issue_body": "This PR adds the missing source file Vaidya2_error.cc to complete the EinsteinExact/Vaidya2 thorn implementation.",
"base_commit": "HEAD",
"resolved_issues"... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-36",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinExact/Vaidya2/src/Vaidya2_error.cc b/arrangements/EinsteinExact/Vaidya2/src/Vaidya2_error.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinExact/Vaidya2/src/Vaidya2_error.cc\n@@ -0,0 +1,2180 @@\n+/* File produced by Kranc */... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,7 @@\n+GaugeWave\n+KS-tilted-EE\n+KerrSchild\n+Minkowski\n+ModifiedSchwarzschildBL\n+ShiftedGaugeWave\n+Vaidya2",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr37 | multi_swe_bench | Add missing RegisterSymmetries.cc in McLachlan/ML_BSSN (einsteintoolkit/Cactus#37) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 37,
"issue_title": "Add missing RegisterSymmetries.cc in McLachlan/ML_BSSN",
"issue_body": "This PR adds the missing source file RegisterSymmetries.cc to complete the McLachlan/ML_BSSN thorn implementation.",
"base_commit": "HEAD",
"resolved_issue... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-37",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/McLachlan/ML_BSSN/src/RegisterSymmetries.cc b/arrangements/McLachlan/ML_BSSN/src/RegisterSymmetries.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/McLachlan/ML_BSSN/src/RegisterSymmetries.cc\n@@ -0,0 +1,187 @@\n+/* File produced by Kranc ... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,6 @@\n+ML_BSSN_EE_sgw3d\n+ML_BSSN_EE_sgw3d_rhs\n+ML_BSSN_NewRad\n+ML_BSSN_sgw3d_harmonic\n+ML_BSSN_sgw3d_harmonic_phi\n+ML_BSSN_sgw3d_rhs",
"pass_criteria": "all_... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr38 | multi_swe_bench | Add missing ML_CCZ4_ADMBaseBoundaryScalar.cc in McLachlan/ML_CCZ4 (einsteintoolkit/Cactus#38) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 38,
"issue_title": "Add missing ML_CCZ4_ADMBaseBoundaryScalar.cc in McLachlan/ML_CCZ4",
"issue_body": "This PR adds the missing source file ML_CCZ4_ADMBaseBoundaryScalar.cc to complete the McLachlan/ML_CCZ4 thorn implementation.",
"base_commit": "HE... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-38",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/McLachlan/ML_CCZ4/src/ML_CCZ4_ADMBaseBoundaryScalar.cc b/arrangements/McLachlan/ML_CCZ4/src/ML_CCZ4_ADMBaseBoundaryScalar.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/McLachlan/ML_CCZ4/src/ML_CCZ4_ADMBaseBoundaryScalar.cc\n@@ -0,0 +1,352... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,2 @@\n+ML_CCZ4_sgw3d\n+ML_CCZ4_sgw3d_rhs",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr39 | multi_swe_bench | Add missing WT_Energy.cc in McLachlan/ML_WaveToy (einsteintoolkit/Cactus#39) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 39,
"issue_title": "Add missing WT_Energy.cc in McLachlan/ML_WaveToy",
"issue_body": "This PR adds the missing source file WT_Energy.cc to complete the McLachlan/ML_WaveToy thorn implementation.",
"base_commit": "HEAD",
"resolved_issues": [
{
... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-39",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/McLachlan/ML_WaveToy/src/WT_Energy.cc b/arrangements/McLachlan/ML_WaveToy/src/WT_Energy.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/McLachlan/ML_WaveToy/src/WT_Energy.cc\n@@ -0,0 +1,161 @@\n+/* File produced by Kranc */\n+\n+#define KR... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,3 @@\n+gaussian-RK4\n+gaussian-RK45\n+gaussian-RK45-adaptive",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr4 | multi_swe_bench | Add missing WaveToy.F90 in CactusWave/WaveToyFreeF90 (einsteintoolkit/Cactus#4) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 4,
"issue_title": "Add missing WaveToy.F90 in CactusWave/WaveToyFreeF90",
"issue_body": "This PR adds the missing source file WaveToy.F90 to complete the CactusWave/WaveToyFreeF90 thorn implementation.",
"base_commit": "HEAD",
"resolved_issues": [... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-4",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/CactusWave/WaveToyFreeF90/src/WaveToy.F90 b/arrangements/CactusWave/WaveToyFreeF90/src/WaveToy.F90\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/CactusWave/WaveToyFreeF90/src/WaveToy.F90\n@@ -0,0 +1,151 @@\n+ /*@@\n+ @file WaveToy.F90... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,1 @@\n+test_rad",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr40 | multi_swe_bench | Add missing WT_Standing.cc in McLachlan/ML_WaveToy (einsteintoolkit/Cactus#40) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 40,
"issue_title": "Add missing WT_Standing.cc in McLachlan/ML_WaveToy",
"issue_body": "This PR adds the missing source file WT_Standing.cc to complete the McLachlan/ML_WaveToy thorn implementation.",
"base_commit": "HEAD",
"resolved_issues": [
... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-40",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/McLachlan/ML_WaveToy/src/WT_Standing.cc b/arrangements/McLachlan/ML_WaveToy/src/WT_Standing.cc\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/McLachlan/ML_WaveToy/src/WT_Standing.cc\n@@ -0,0 +1,155 @@\n+/* File produced by Kranc */\n+\n+#def... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,3 @@\n+gaussian-RK4\n+gaussian-RK45\n+gaussian-RK45-adaptive",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr5 | multi_swe_bench | Add missing AHFinder_dis.F in EinsteinAnalysis/AHFinder (einsteintoolkit/Cactus#5) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 5,
"issue_title": "Add missing AHFinder_dis.F in EinsteinAnalysis/AHFinder",
"issue_body": "This PR adds the missing source file AHFinder_dis.F to complete the EinsteinAnalysis/AHFinder thorn implementation.",
"base_commit": "HEAD",
"resolved_issu... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-5",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinAnalysis/AHFinder/src/AHFinder_dis.F b/arrangements/EinsteinAnalysis/AHFinder/src/AHFinder_dis.F\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinAnalysis/AHFinder/src/AHFinder_dis.F\n@@ -0,0 +1,618 @@\n+/*@@\n+ @file AHFi... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,1 @@\n+test_AHF_2",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr6 | multi_swe_bench | Add missing AHFinder_calcsigma.F in EinsteinAnalysis/AHFinder (einsteintoolkit/Cactus#6) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 6,
"issue_title": "Add missing AHFinder_calcsigma.F in EinsteinAnalysis/AHFinder",
"issue_body": "This PR adds the missing source file AHFinder_calcsigma.F to complete the EinsteinAnalysis/AHFinder thorn implementation.",
"base_commit": "HEAD",
"r... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-6",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinAnalysis/AHFinder/src/AHFinder_calcsigma.F b/arrangements/EinsteinAnalysis/AHFinder/src/AHFinder_calcsigma.F\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinAnalysis/AHFinder/src/AHFinder_calcsigma.F\n@@ -0,0 +1,312 @@\n+/*@@\n... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,1 @@\n+test_AHF_2",
"pass_criteria": "all_tests_pass"
} | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr7 | multi_swe_bench | Add missing GRHydro_Jacobian_state.c in EinsteinEvolve/GRHydro (einsteintoolkit/Cactus#7) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 7,
"issue_title": "Add missing GRHydro_Jacobian_state.c in EinsteinEvolve/GRHydro",
"issue_body": "This PR adds the missing source file GRHydro_Jacobian_state.c to complete the EinsteinEvolve/GRHydro thorn implementation.",
"base_commit": "HEAD",
... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-7",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Jacobian_state.c b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Jacobian_state.c\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Jacobian_state.c\n@@ -0,0 +1,49 @@\n+#inc... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,10 @@\n+GRHydro_test_shock\n+GRHydro_test_shock_mp5\n+GRHydro_test_shock_ppm\n+GRHydro_test_tov_ppm_ML\n+GRHydro_test_tov_ppm_ML_disable_internal_excision\n+GRHydro... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr8 | multi_swe_bench | Add missing GRHydro_PPMReconstruct_drv_opt.F90 in EinsteinEvolve/GRHydro (einsteintoolkit/Cactus#8) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 8,
"issue_title": "Add missing GRHydro_PPMReconstruct_drv_opt.F90 in EinsteinEvolve/GRHydro",
"issue_body": "This PR adds the missing source file GRHydro_PPMReconstruct_drv_opt.F90 to complete the EinsteinEvolve/GRHydro thorn implementation.",
"base... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-8",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_PPMReconstruct_drv_opt.F90 b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_PPMReconstruct_drv_opt.F90\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_PPMReconstruct_drv_op... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,10 @@\n+GRHydro_test_shock\n+GRHydro_test_shock_mp5\n+GRHydro_test_shock_ppm\n+GRHydro_test_tov_ppm_ML\n+GRHydro_test_tov_ppm_ML_disable_internal_excision\n+GRHydro... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_einsteintoolkit_Cactus_pr9 | multi_swe_bench | Add missing GRHydro_Con2PrimM_polytype_pt.c in EinsteinEvolve/GRHydro (einsteintoolkit/Cactus#9) | {
"org": "einsteintoolkit",
"repo": "Cactus",
"pr_number": 9,
"issue_title": "Add missing GRHydro_Con2PrimM_polytype_pt.c in EinsteinEvolve/GRHydro",
"issue_body": "This PR adds the missing source file GRHydro_Con2PrimM_polytype_pt.c to complete the EinsteinEvolve/GRHydro thorn implementation.",
"base_commi... | {
"env_type": "docker",
"docker_image": "mswebench/einsteintoolkit_m_cactus:pr-9",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Con2PrimM_polytype_pt.c b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Con2PrimM_polytype_pt.c\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/arrangements/EinsteinEvolve/GRHydro/src/GRHydro_Con2PrimM_polytype_pt.c\n@@... | {
"test_patch": "diff --git a/all_tests.txt b/all_tests.txt\nnew file mode 100644\nindex 0000000..0000000\n--- /dev/null\n+++ b/all_tests.txt\n@@ -0,0 +1,10 @@\n+GRHydro_test_shock\n+GRHydro_test_shock_mp5\n+GRHydro_test_shock_ppm\n+GRHydro_test_tov_ppm_ML\n+GRHydro_test_tov_ppm_ML_disable_internal_excision\n+GRHydro... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3313 | multi_swe_bench | Fixed error using AMOEBA 2018 with RNA (openmm/openmm#3313) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3313,
"issue_title": "Fixed error using AMOEBA 2018 with RNA",
"issue_body": "Fixes #3305.",
"base_commit": "edee11b60102306298e1bca39fe5989c2ddc9a91",
"resolved_issues": [
{
"number": 3305,
"title": "AMOEBA RNA forcefield cannot match bond... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3313",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/devtools/forcefield-scripts/residuesFinal.xml b/devtools/forcefield-scripts/residuesFinal.xml\nindex 7fb0398466..80b8e3e3a0 100644\n--- a/devtools/forcefield-scripts/residuesFinal.xml\n+++ b/devtools/forcefield-scripts/residuesFinal.xml\n@@ -2030,7 +2030,7 @@\n <Atom name=\"C2'\" tinker... | {
"test_patch": "diff --git a/wrappers/python/tests/TestForceField.py b/wrappers/python/tests/TestForceField.py\nindex a7e07c15f9..690d51f43e 100644\n--- a/wrappers/python/tests/TestForceField.py\n+++ b/wrappers/python/tests/TestForceField.py\n@@ -1345,23 +1345,23 @@ def test_Amoeba18BPTI(self):\n self.assert... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3324 | multi_swe_bench | NBFIX is applied correctly to 1-4 interactions (openmm/openmm#3324) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3324,
"issue_title": "NBFIX is applied correctly to 1-4 interactions",
"issue_body": "Fixes #3257.",
"base_commit": "892839b89419465d52fb6c4f084b6a3888021311",
"resolved_issues": [
{
"number": 3257,
"title": "Incorrect non-bonded energy wit... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3324",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/charmmpsffile.py b/wrappers/python/openmm/app/charmmpsffile.py\nindex 3f07245326..254f3454c6 100644\n--- a/wrappers/python/openmm/app/charmmpsffile.py\n+++ b/wrappers/python/openmm/app/charmmpsffile.py\n@@ -1387,8 +1387,13 @@ def _is_bond_in_water(bond):\n ... | {
"test_patch": "diff --git a/wrappers/python/tests/TestCharmmFiles.py b/wrappers/python/tests/TestCharmmFiles.py\nindex a7f5a16c78..10f4c2c59d 100644\n--- a/wrappers/python/tests/TestCharmmFiles.py\n+++ b/wrappers/python/tests/TestCharmmFiles.py\n@@ -150,6 +150,30 @@ def test_NBFIX(self):\n ene = state.getPo... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr1468 | multi_swe_bench | CMake: improve HDF5 support (AMReX-Codes/amrex#1468) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 1468,
"issue_title": "CMake: improve HDF5 support",
"issue_body": "## Summary\r\n\r\nFix #1463\r\n\r\n## Additional background\r\n\r\n## Checklist\r\n\r\nThe proposed changes:\r\n- [ ] fix a bug or incorrect behavior in AMReX\r\n- [ ] add new capabilities ... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-1468",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Tools/CMake/AMReXThirdPartyLibraries.cmake b/Tools/CMake/AMReXThirdPartyLibraries.cmake\nindex 52ad1ff27ce..82193da3c2f 100644\n--- a/Tools/CMake/AMReXThirdPartyLibraries.cmake\n+++ b/Tools/CMake/AMReXThirdPartyLibraries.cmake\n@@ -3,13 +3,19 @@\n #\n if (ENABLE_HDF5)\n set(HDF5_PREFE... | {
"test_patch": "diff --git a/Tests/CMakeLists.txt b/Tests/CMakeLists.txt\nindex 29cd7d32e83..f97a625c78c 100644\n--- a/Tests/CMakeLists.txt\n+++ b/Tests/CMakeLists.txt\n@@ -7,6 +7,10 @@ if (ENABLE_PARTICLES)\n list(APPEND AMREX_TESTS_SUBDIRS Particles)\n endif ()\n \n+if (ENABLE_HDF5)\n+ list(APPEND AMREX_TESTS... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr1842 | multi_swe_bench | Feature/non local parallel copy (AMReX-Codes/amrex#1842) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 1842,
"issue_title": "Feature/non local parallel copy",
"issue_body": "## Summary\r\n\r\nThis PR introduces \"Multiblock\" capabilities to AMReX.\r\n\r\n## Additional background\r\n\r\nMultiblock refers to having multiple distinct computational domains, kn... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-1842",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Src/Base/AMReX_Extension.H b/Src/Base/AMReX_Extension.H\nindex 40e2da188bc..96253c1437b 100644\n--- a/Src/Base/AMReX_Extension.H\n+++ b/Src/Base/AMReX_Extension.H\n@@ -151,7 +151,8 @@\n #define AMREX_FALLTHROUGH ((void)0)\n #endif\n \n-#if !defined(AMREX_NO_NODISCARD) && defined(__has_cpp... | {
"test_patch": "diff --git a/Tests/CMakeLists.txt b/Tests/CMakeLists.txt\nindex 2c515d96e6e..fee31c13603 100644\n--- a/Tests/CMakeLists.txt\n+++ b/Tests/CMakeLists.txt\n@@ -1,7 +1,7 @@\n #\n # List of subdirectories to search for CMakeLists.\n #\n-set( AMREX_TESTS_SUBDIRS AsyncOut )\n+set( AMREX_TESTS_SUBDIRS AsyncO... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr2084 | multi_swe_bench | Fix some macro issues in CMake Fortran build (AMReX-Codes/amrex#2084) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 2084,
"issue_title": "Fix some macro issues in CMake Fortran build",
"issue_body": "Include AMReX_Config.H in Fortran files that need preprocessing. Do not\r\npass those definitions already defined in AMReX_Config.H to the Fortran\r\ncompiler in the cmake... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-2084",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Src/AmrCore/AMReX_INTERP_2D.F90 b/Src/AmrCore/AMReX_INTERP_2D.F90\nindex 8e93e495f70..042f47e96b9 100644\n--- a/Src/AmrCore/AMReX_INTERP_2D.F90\n+++ b/Src/AmrCore/AMReX_INTERP_2D.F90\n@@ -331,7 +331,7 @@ subroutine AMREX_PROTECT_INTERP (fine, fine_l1,fine_l2,fine_h1,fine_h2, fblo, fb\n ... | {
"test_patch": "diff --git a/Tests/FortranInterface/Advection_F/Source/compute_dt_mod.F90 b/Tests/FortranInterface/Advection_F/Source/compute_dt_mod.F90\nindex 3c1c63188ac..90fb5a97b9f 100644\n--- a/Tests/FortranInterface/Advection_F/Source/compute_dt_mod.F90\n+++ b/Tests/FortranInterface/Advection_F/Source/compute_... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr2475 | multi_swe_bench | CI: Run 2D and 1D Tests (AMReX-Codes/amrex#2475) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 2475,
"issue_title": "CI: Run 2D and 1D Tests",
"issue_body": "## Summary\r\n\r\nRun tests also for 2D and 1D builds of AMReX.\r\n\r\n## Additional background\r\n\r\nRelated to 2D issues with `DenseBin` in WarpX: https://github.com/ECP-WarpX/WarpX/pull/255... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-2475",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/.github/workflows/gcc.yml b/.github/workflows/gcc.yml\nindex 9ea1ca69516..244b8192a76 100644\n--- a/.github/workflows/gcc.yml\n+++ b/.github/workflows/gcc.yml\n@@ -40,8 +40,8 @@ jobs:\n ctest --output-on-failure\n \n # Build libamrex and all tests\n- tests_build:\n- name: GN... | {
"test_patch": "diff --git a/Tests/AsyncOut/multifab/main.cpp b/Tests/AsyncOut/multifab/main.cpp\nindex b9b30f297de..d1331d85862 100644\n--- a/Tests/AsyncOut/multifab/main.cpp\n+++ b/Tests/AsyncOut/multifab/main.cpp\n@@ -53,8 +53,12 @@ void main_main ()\n else if (n_boxes_per_rank != 0)\n {\n ... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr2583 | multi_swe_bench | Update locations for tutorials and minor formatting. (AMReX-Codes/amrex#2583) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 2583,
"issue_title": "Update locations for tutorials and minor formatting.",
"issue_body": "## Summary\r\nUpdate remaining locations for tutorials referenced in the docs. \r\n\r\n## Additional background\r\nFollow up to #2576\r\n## Checklist\r\n\r\nThe pro... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-2583",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Docs/sphinx_documentation/source/Fortran.rst b/Docs/sphinx_documentation/source/Fortran.rst\nindex cd613bd6d85..ddfcd755d54 100644\n--- a/Docs/sphinx_documentation/source/Fortran.rst\n+++ b/Docs/sphinx_documentation/source/Fortran.rst\n@@ -384,7 +384,7 @@ interfaces:\n character(c... | {
"test_patch": "diff --git a/Docs/sphinx_documentation/source/Testing.rst b/Docs/sphinx_documentation/source/Testing.rst\nindex 573ed9a3aa8..b7e32c9477b 100644\n--- a/Docs/sphinx_documentation/source/Testing.rst\n+++ b/Docs/sphinx_documentation/source/Testing.rst\n@@ -13,7 +13,7 @@ quickly on every commit. For more ... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr2813 | multi_swe_bench | CMake: 3.17+ (AMReX-Codes/amrex#2813) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 2813,
"issue_title": "CMake: 3.17+",
"issue_body": "## Summary\r\n\r\nWe are using `find_package(CUDAToolkit ...)` now, which is only supported in CMake 3.17+.\r\nFollow-up to #2757\r\n\r\n## Additional background\r\n\r\nTechnically, we want to go to 3.20+... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-2813",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/CMakeLists.txt b/CMakeLists.txt\nindex f957b2ef5b9..773058369f7 100644\n--- a/CMakeLists.txt\n+++ b/CMakeLists.txt\n@@ -1,4 +1,4 @@\n-cmake_minimum_required(VERSION 3.14)\n+cmake_minimum_required(VERSION 3.17)\n \n #\n # Allow for MSVC Runtime library controls\ndiff --git a/Docs/sphinx_do... | {
"test_patch": "diff --git a/Tests/CMakeTestInstall/CMakeLists.txt b/Tests/CMakeTestInstall/CMakeLists.txt\nindex 382d1911e5a..fdac1442cac 100644\n--- a/Tests/CMakeTestInstall/CMakeLists.txt\n+++ b/Tests/CMakeTestInstall/CMakeLists.txt\n@@ -3,7 +3,7 @@\n # building and running the code\n # in Tests/Amr/Advection_Amr... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr3142 | multi_swe_bench | Fix nl test (AMReX-Codes/amrex#3142) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 3142,
"issue_title": "Fix nl test",
"issue_body": "This fixes a bug introduced in PR #3060 related to building neighbor lists between particles of different types. I also made it so that CI tests would have caught this bug. \r\n\r\nCloses #3127 \r\n\r\nThe... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-3142",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Src/Particle/AMReX_NeighborParticlesI.H b/Src/Particle/AMReX_NeighborParticlesI.H\nindex 696553aaa47..ed2e1844725 100644\n--- a/Src/Particle/AMReX_NeighborParticlesI.H\n+++ b/Src/Particle/AMReX_NeighborParticlesI.H\n@@ -828,9 +828,9 @@ buildNeighborList (CheckPair&& check_pair, OtherPCTyp... | {
"test_patch": "diff --git a/Tests/Particles/NeighborList/CMakeLists.txt b/Tests/Particles/NeighborList/CMakeLists.txt\nnew file mode 100644\nindex 00000000000..226771586b5\n--- /dev/null\n+++ b/Tests/Particles/NeighborList/CMakeLists.txt\n@@ -0,0 +1,7 @@\n+set(_sources main.cpp)\n+set(_input_files inputs)\n+\n+... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr3325 | multi_swe_bench | Port InitRandom for pure SoA (AMReX-Codes/amrex#3325) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 3325,
"issue_title": "Port InitRandom for pure SoA",
"issue_body": "This is useful for porting and testing other features, like Checkpoint / Restart. I've also added a test.\r\n\r\nFollow-up to #2878.\r\n\r\nThe proposed changes:\r\n- [x] fix a bug or inco... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-3325",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Src/Particle/AMReX_ParticleInit.H b/Src/Particle/AMReX_ParticleInit.H\nindex 60a20c0e835..28427de32fb 100644\n--- a/Src/Particle/AMReX_ParticleInit.H\n+++ b/Src/Particle/AMReX_ParticleInit.H\n@@ -1046,17 +1046,13 @@ InitRandom (Long icount,\n \n for (Long j = 0;... | {
"test_patch": "diff --git a/Tests/Particles/InitRandom/CMakeLists.txt b/Tests/Particles/InitRandom/CMakeLists.txt\nnew file mode 100644\nindex 00000000000..c032392c5df\n--- /dev/null\n+++ b/Tests/Particles/InitRandom/CMakeLists.txt\n@@ -0,0 +1,14 @@\n+# This tests requires particle support\n+if (NOT AMReX_PARTICLES... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr3332 | multi_swe_bench | Implement Checkpoint, Restart, and Plotfile for pure SOA (AMReX-Codes/amrex#3332) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 3332,
"issue_title": "Implement Checkpoint, Restart, and Plotfile for pure SOA",
"issue_body": "Follow-up to #2878.\r\n\r\nThe proposed changes:\r\n- [x] fix a bug or incorrect behavior in AMReX\r\n- [x] add new capabilities to AMReX\r\n- [ ] changes answe... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-3332",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Src/Particle/AMReX_ParticleContainer.H b/Src/Particle/AMReX_ParticleContainer.H\nindex abffbefc860..3e6a6113fc8 100644\n--- a/Src/Particle/AMReX_ParticleContainer.H\n+++ b/Src/Particle/AMReX_ParticleContainer.H\n@@ -1346,7 +1346,8 @@ protected:\n * \\param lev_max\n * \\param loca... | {
"test_patch": "diff --git a/Tests/Particles/CheckpointRestartSOA/CMakeLists.txt b/Tests/Particles/CheckpointRestartSOA/CMakeLists.txt\nnew file mode 100644\nindex 00000000000..087d3ad4998\n--- /dev/null\n+++ b/Tests/Particles/CheckpointRestartSOA/CMakeLists.txt\n@@ -0,0 +1,14 @@\n+# This tests requires particle sup... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr3350 | multi_swe_bench | Ascent: SoA Particle Support (AMReX-Codes/amrex#3350) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 3350,
"issue_title": "Ascent: SoA Particle Support",
"issue_body": "## Summary\r\n\r\nAdd support for pure SoA layouted particle containers for Ascent.\r\n\r\n## Additional background\r\n\r\nFollow-up to #2878.\r\n\r\n## Checklist\r\n\r\nThe proposed chang... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-3350",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Src/Extern/Conduit/AMReX_Conduit_Blueprint.H b/Src/Extern/Conduit/AMReX_Conduit_Blueprint.H\nindex 6d23bcf07ed..9ac8eb31fd0 100644\n--- a/Src/Extern/Conduit/AMReX_Conduit_Blueprint.H\n+++ b/Src/Extern/Conduit/AMReX_Conduit_Blueprint.H\n@@ -96,9 +96,8 @@ namespace amrex\n // coordset ... | {
"test_patch": "diff --git a/Tests/Particles/Ascent_Insitu_SOA/CMakeLists.txt b/Tests/Particles/Ascent_Insitu_SOA/CMakeLists.txt\nnew file mode 100644\nindex 00000000000..82216a02af8\n--- /dev/null\n+++ b/Tests/Particles/Ascent_Insitu_SOA/CMakeLists.txt\n@@ -0,0 +1,13 @@\n+if ( NOT AMReX_ASCENT )\n+ return ()\n+en... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr3581 | multi_swe_bench | BCType::ext_dir_cc (AMReX-Codes/amrex#3581) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 3581,
"issue_title": "BCType::ext_dir_cc",
"issue_body": "Add a new BC type `BCType::ext_dir_cc` to address the issue in #3580. For cell conservation interpolation, the boundary location for `BCType::ext_dir` is on the domain face. Applications assuming bo... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-3581",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Docs/sphinx_documentation/source/Basics.rst b/Docs/sphinx_documentation/source/Basics.rst\nindex fd2d12ee0b8..1227b5f7b71 100644\n--- a/Docs/sphinx_documentation/source/Basics.rst\n+++ b/Docs/sphinx_documentation/source/Basics.rst\n@@ -2537,12 +2537,27 @@ The basic idea behind physical bo... | {
"test_patch": "diff --git a/Tests/FortranInterface/Advection_F/Source/fillpatch_mod.F90 b/Tests/FortranInterface/Advection_F/Source/fillpatch_mod.F90\nindex f337de6e7ff..c79f2aa7b9a 100644\n--- a/Tests/FortranInterface/Advection_F/Source/fillpatch_mod.F90\n+++ b/Tests/FortranInterface/Advection_F/Source/fillpatch_m... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr3585 | multi_swe_bench | Pure SoA Particle: Separate Array for IdCPU (AMReX-Codes/amrex#3585) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 3585,
"issue_title": "Pure SoA Particle: Separate Array for IdCPU",
"issue_body": "## Summary\r\n\r\nThis addresses a regression we see when moving to pure SoA particles:\r\n- slightly slower read/write to Ids when needed, e.g., for sorting\r\n- issues goi... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-3585",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Src/Particle/AMReX_ParticleContainerI.H b/Src/Particle/AMReX_ParticleContainerI.H\nindex b845d130d5c..9dd1d39b953 100644\n--- a/Src/Particle/AMReX_ParticleContainerI.H\n+++ b/Src/Particle/AMReX_ParticleContainerI.H\n@@ -18,10 +18,10 @@ ParticleContainer_impl<ParticleType, NArrayReal, NArr... | {
"test_patch": "diff --git a/Tests/Particles/RedistributeSOA/main.cpp b/Tests/Particles/RedistributeSOA/main.cpp\nindex 94715b7d6aa..62da81def81 100644\n--- a/Tests/Particles/RedistributeSOA/main.cpp\n+++ b/Tests/Particles/RedistributeSOA/main.cpp\n@@ -92,6 +92,7 @@ class TestParticleContainer\n {\n ... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr388 | multi_swe_bench | Bunch of changes to support MLMG performance analysis and tuning (AMReX-Codes/amrex#388) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 388,
"issue_title": "Bunch of changes to support MLMG performance analysis and tuning",
"issue_body": "",
"base_commit": "839bba4a149a1fb74de7ad3c861aad2737586720",
"resolved_issues": [
{
"number": 393,
"title": "Weiqun/perf",
"bo... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-388",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Src/Base/AMReX.cpp b/Src/Base/AMReX.cpp\nindex d42c0cca2d4..ec0a2f92e94 100644\n--- a/Src/Base/AMReX.cpp\n+++ b/Src/Base/AMReX.cpp\n@@ -20,6 +20,8 @@\n \n #include <AMReX_Gpu.H>\n \n+#include <AMReX_Machine.H>\n+\n #ifdef AMREX_USE_EB\n #include <AMReX_EB2.H>\n #endif\n@@ -533,6 +535,7 @@... | {
"test_patch": "diff --git a/Tests/LinearSolvers/MLMG/GNUmakefile b/Tests/LinearSolvers/MLMG/GNUmakefile\nindex 4a12a62bd49..eed6d56a155 100644\n--- a/Tests/LinearSolvers/MLMG/GNUmakefile\n+++ b/Tests/LinearSolvers/MLMG/GNUmakefile\n@@ -1,19 +1,20 @@\n AMREX_HOME ?= ../../../\n \n-DEBUG\t= FALSE\n-#DEBUG\t= TRUE\n+D... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr4144 | multi_swe_bench | Fix ParmParse::query_enum_case_insensitive (AMReX-Codes/amrex#4144) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 4144,
"issue_title": "Fix ParmParse::query_enum_case_insensitive",
"issue_body": "Since #4143, we can no longer cast the position of the found string in the vector of all names to obtain its enum value, because the enum values can now have duplicates.\r\n"... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-4144",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Src/Base/AMReX_Enum.H b/Src/Base/AMReX_Enum.H\nindex 2bb503d4113..b94e30d396e 100644\n--- a/Src/Base/AMReX_Enum.H\n+++ b/Src/Base/AMReX_Enum.H\n@@ -67,6 +67,26 @@ namespace amrex\n }\n }\n \n+ template <typename T, typename ET = amrex_enum_traits<T>,\n+ std::en... | {
"test_patch": "diff --git a/Tests/Enum/main.cpp b/Tests/Enum/main.cpp\nindex 69ed91adc27..b0647836e49 100644\n--- a/Tests/Enum/main.cpp\n+++ b/Tests/Enum/main.cpp\n@@ -129,6 +129,11 @@ int main (int argc, char* argv[])\n AMREX_ALWAYS_ASSERT(amrex::getEnum<MyColor2>(\"green\") == MyColor2::green);\n ... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr4163 | multi_swe_bench | Named SoA Support (AMReX-Codes/amrex#4163) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 4163,
"issue_title": "Named SoA Support",
"issue_body": "## Summary\r\n\r\nAdd support to optionally name SoA Real and Int components, both for compile-time and runtime components.\r\n\r\n- [x] define and defaults\r\n- [x] single tile `Get*Data(std::string... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-4163",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Src/Particle/AMReX_ParticleContainer.H b/Src/Particle/AMReX_ParticleContainer.H\nindex 03a2254a10e..4b347d283b8 100644\n--- a/Src/Particle/AMReX_ParticleContainer.H\n+++ b/Src/Particle/AMReX_ParticleContainer.H\n@@ -60,6 +60,7 @@\n #include <memory>\n #include <numeric>\n #include <random... | {
"test_patch": "diff --git a/Tests/Particles/NamedSoAComponents/CMakeLists.txt b/Tests/Particles/NamedSoAComponents/CMakeLists.txt\nnew file mode 100644\nindex 00000000000..e14ddd68975\n--- /dev/null\n+++ b/Tests/Particles/NamedSoAComponents/CMakeLists.txt\n@@ -0,0 +1,10 @@\n+foreach(D IN LISTS AMReX_SPACEDIM)\n+ ... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr4526 | multi_swe_bench | Reduce use of SuperParticle (AMReX-Codes/amrex#4526) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 4526,
"issue_title": "Reduce use of SuperParticle",
"issue_body": "## Summary\r\n\r\nIn preparation of #4404, this PR reduces the reliance of SuperParticle. The issue with getSuperParticle is that the compiler is instructed to read in all the data of the p... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-4526",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/.github/workflows/gcc.yml b/.github/workflows/gcc.yml\nindex 3249c6eacd5..0e19117ded1 100644\n--- a/.github/workflows/gcc.yml\n+++ b/.github/workflows/gcc.yml\n@@ -376,7 +376,7 @@ jobs:\n # /home/runner/work/amrex/amrex/Src/Base/AMReX_IntVect.H:194:92: error: array subscript -1 is b... | {
"test_patch": "diff --git a/Tests/Particles/CheckpointRestartSOA/main.cpp b/Tests/Particles/CheckpointRestartSOA/main.cpp\nindex e3c544516e2..af2ce0f7a0b 100644\n--- a/Tests/Particles/CheckpointRestartSOA/main.cpp\n+++ b/Tests/Particles/CheckpointRestartSOA/main.cpp\n@@ -150,21 +150,21 @@ void test ()\n std... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr4552 | multi_swe_bench | ParmParse: Add parser support for bool (AMReX-Codes/amrex#4552) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 4552,
"issue_title": "ParmParse: Add parser support for bool",
"issue_body": "Close #4535 ",
"base_commit": "f7f98c8023177cf969aba9e17899d1200b4b4ac2",
"resolved_issues": [
{
"number": 4535,
"title": "`bool` support in `queryAddWithPars... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-4552",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Src/Base/AMReX_ParmParse.H b/Src/Base/AMReX_ParmParse.H\nindex 0e2aa7d37f3..c7ec4728b6d 100644\n--- a/Src/Base/AMReX_ParmParse.H\n+++ b/Src/Base/AMReX_ParmParse.H\n@@ -1108,6 +1108,7 @@ public:\n * scalar. The return value indicates whether it's found. Note that\n * queryWithPar... | {
"test_patch": "diff --git a/Tests/ParmParse/inputs b/Tests/ParmParse/inputs\nindex c7b5af019b7..d109fa5579a 100644\n--- a/Tests/ParmParse/inputs\n+++ b/Tests/ParmParse/inputs\n@@ -63,6 +63,11 @@ ny = nx\n \n do_this = 1\n \n+# query bool with parser\n+my_value = 10\n+my_threshold = 3\n+my_bool_flag = \"(my_threshol... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr4629 | multi_swe_bench | Adding support to memory collection of Particles and MultiFabs within a grid (AMReX-Codes/amrex#4629) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 4629,
"issue_title": "Adding support to memory collection of Particles and MultiFabs within a grid",
"issue_body": "## Summary\r\nThis PR adds functions to return memory usage from `Particles` and `FabArray`/`MultiFabs` within a grid/box. The main goal is ... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-4629",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Src/Base/AMReX_FabArray.H b/Src/Base/AMReX_FabArray.H\nindex 3588a8f0714..a47a9278f34 100644\n--- a/Src/Base/AMReX_FabArray.H\n+++ b/Src/Base/AMReX_FabArray.H\n@@ -817,6 +817,10 @@ public:\n template <class F=FAB, std::enable_if_t<IsBaseFab<F>::value,int> = 0>\n void setDomainBndr... | {
"test_patch": "diff --git a/Tests/CMakeLists.txt b/Tests/CMakeLists.txt\nindex 5e0877e6c24..3db6cccbf8d 100644\n--- a/Tests/CMakeLists.txt\n+++ b/Tests/CMakeLists.txt\n@@ -125,9 +125,9 @@ else()\n #\n # List of subdirectories to search for CMakeLists.\n #\n- set( AMREX_TESTS_SUBDIRS Amr AsyncOut CallNoin... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_AMReX-Codes_amrex_pr78 | multi_swe_bench | trying to get bug fixes for DivergenceOp into weiqun/eb branch (AMReX-Codes/amrex#78) | {
"org": "AMReX-Codes",
"repo": "amrex",
"pr_number": 78,
"issue_title": "trying to get bug fixes for DivergenceOp into weiqun/eb branch",
"issue_body": "",
"base_commit": "2e92a6c52bd15ea82ac3364c2da5adb5ca887e6e",
"resolved_issues": [
{
"number": 77,
"title": "getting some bug fixes over... | {
"env_type": "docker",
"docker_image": "mswebench/amrex-codes_m_amrex:pr-78",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/Src/EBAMRElliptic/AMReX_AMREBMultiGrid.H b/Src/EBAMRElliptic/AMReX_AMREBMultiGrid.H\nindex cc806d29845..c2cc7c4b086 100644\n--- a/Src/EBAMRElliptic/AMReX_AMREBMultiGrid.H\n+++ b/Src/EBAMRElliptic/AMReX_AMREBMultiGrid.H\n@@ -71,6 +71,22 @@ namespace amrex\n AMR... | {
"test_patch": "diff --git a/Tests/EBAMRElliptic/exec/cond.inputs b/Tests/EBAMRElliptic/exec/cond.inputs\nindex e0ade9bd292..b35cd1de5cc 100644\n--- a/Tests/EBAMRElliptic/exec/cond.inputs\n+++ b/Tests/EBAMRElliptic/exec/cond.inputs\n@@ -18,3 +18,6 @@ fill_ratio = 0.7\n buffer_size = 2\n \n which_geom = 5\n+\n+num_sm... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3416 | multi_swe_bench | Support prmtop files created by chamber (openmm/openmm#3416) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3416,
"issue_title": "Support prmtop files created by chamber",
"issue_body": "Implements #3225.",
"base_commit": "f2cdf70afc3ec4f4f0a4fc3aa5ca4761fc994cf1",
"resolved_issues": [
{
"number": null,
"title": "Support prmtop files created by c... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3416",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/amberprmtopfile.py b/wrappers/python/openmm/app/amberprmtopfile.py\nindex c8021ddb0e..5c6d280da3 100644\n--- a/wrappers/python/openmm/app/amberprmtopfile.py\n+++ b/wrappers/python/openmm/app/amberprmtopfile.py\n@@ -6,7 +6,7 @@\n Biological Structures at Stanford... | {
"test_patch": "diff --git a/wrappers/python/tests/TestAmberPrmtopFile.py b/wrappers/python/tests/TestAmberPrmtopFile.py\nindex 1461e2a272..4473a2d86b 100644\n--- a/wrappers/python/tests/TestAmberPrmtopFile.py\n+++ b/wrappers/python/tests/TestAmberPrmtopFile.py\n@@ -367,15 +367,31 @@ def test_with_dcd_reporter(self)... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3480 | multi_swe_bench | Added option for box shape when building solvent boxes (openmm/openmm#3480) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3480,
"issue_title": "Added option for box shape when building solvent boxes",
"issue_body": "Fixes #3124.",
"base_commit": "952d3402d12dda9931a0af2dce24fd9875e9b730",
"resolved_issues": [
{
"number": 3124,
"title": "Add truncated octahedra... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3480",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/modeller.py b/wrappers/python/openmm/app/modeller.py\nindex 0920053d26..47ee5d9787 100644\n--- a/wrappers/python/openmm/app/modeller.py\n+++ b/wrappers/python/openmm/app/modeller.py\n@@ -6,7 +6,7 @@\n Biological Structures at Stanford, funded under the NIH Roadm... | {
"test_patch": "diff --git a/wrappers/python/tests/TestModeller.py b/wrappers/python/tests/TestModeller.py\nindex ec65574f11..467ee8083a 100644\n--- a/wrappers/python/tests/TestModeller.py\n+++ b/wrappers/python/tests/TestModeller.py\n@@ -1,7 +1,5 @@\n from collections import defaultdict\n import unittest\n-import m... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3493 | multi_swe_bench | Ensure bond lengths are set before creating forces that depend on them (openmm/openmm#3493) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3493,
"issue_title": "Ensure bond lengths are set before creating forces that depend on them",
"issue_body": "Fixes #3487.",
"base_commit": "a7e6f0a906c5c4dd544f134eceb177cfea7b637b",
"resolved_issues": [
{
"number": 3487,
"title": "Switchi... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3493",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/forcefield.py b/wrappers/python/openmm/app/forcefield.py\nindex 19c69a6735..897678a878 100644\n--- a/wrappers/python/openmm/app/forcefield.py\n+++ b/wrappers/python/openmm/app/forcefield.py\n@@ -2057,6 +2057,11 @@ def parseElement(element, ff):\n gen... | {
"test_patch": "diff --git a/wrappers/python/tests/TestForceField.py b/wrappers/python/tests/TestForceField.py\nindex f78445af2f..a0f83b909b 100644\n--- a/wrappers/python/tests/TestForceField.py\n+++ b/wrappers/python/tests/TestForceField.py\n@@ -1020,7 +1020,7 @@ def test_ImpropersOrdering(self):\n system1 ... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3506 | multi_swe_bench | Do not add constraints involving extra particles (openmm/openmm#3506) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3506,
"issue_title": "Do not add constraints involving extra particles",
"issue_body": "Fixes #3499.",
"base_commit": "434d7afb1266da6d0b5fcd190593c470a0954c51",
"resolved_issues": [
{
"number": 3499,
"title": "TIP4P waters not compatible w... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3506",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/internal/amber_file_parser.py b/wrappers/python/openmm/app/internal/amber_file_parser.py\nindex 26832fe589..e36152a962 100644\n--- a/wrappers/python/openmm/app/internal/amber_file_parser.py\n+++ b/wrappers/python/openmm/app/internal/amber_file_parser.py\n@@ -768... | {
"test_patch": "diff --git a/wrappers/python/tests/TestAmberPrmtopFile.py b/wrappers/python/tests/TestAmberPrmtopFile.py\nindex 4473a2d86b..b107e9dede 100644\n--- a/wrappers/python/tests/TestAmberPrmtopFile.py\n+++ b/wrappers/python/tests/TestAmberPrmtopFile.py\n@@ -448,5 +448,14 @@ def testAmberCMAP(self):\n ... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3508 | multi_swe_bench | Max Drude distance defaults to 0.02 nm (openmm/openmm#3508) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3508,
"issue_title": "Max Drude distance defaults to 0.02 nm",
"issue_body": "This is part of #2513.",
"base_commit": "a76c2de14b5a1ab604e95a5c4197e5a586e3000d",
"resolved_issues": [
{
"number": null,
"title": "Max Drude distance defaults t... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3508",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h b/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h\nindex 2fc0a95a28..628dcfd38f 100644\n--- a/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h\n+++ b/plugins/drude/openmmapi/include/openmm/DrudeIntegrator.h\n@@ -9,7... | {
"test_patch": "diff --git a/wrappers/python/tests/TestAPIUnits.py b/wrappers/python/tests/TestAPIUnits.py\nindex 6c404754c8..5522bcc452 100644\n--- a/wrappers/python/tests/TestAPIUnits.py\n+++ b/wrappers/python/tests/TestAPIUnits.py\n@@ -1051,7 +1051,7 @@ def testDrudeLangevinIntegrator(self):\n self.assert... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3512 | multi_swe_bench | computeDrudeTemperature (openmm/openmm#3512) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3512,
"issue_title": "computeDrudeTemperature",
"issue_body": "Adds a convenience function to compute the instantaneous Drude temperature in the `DrudeNoseHooverIntegrator` and `DrudeLangevinIntegrator`.\r\n\r\n",
"base_commit": "f5eea2199fa16bbda8f2e6d62232... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3512",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h b/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h\nindex 8f39c6e075..5b26adcfbc 100644\n--- a/plugins/drude/openmmapi/include/openmm/DrudeLangevinIntegrator.h\n+++ b/plugins/drude/openmmapi/include/openmm/Dr... | {
"test_patch": "diff --git a/plugins/drude/tests/TestDrudeLangevinIntegrator.h b/plugins/drude/tests/TestDrudeLangevinIntegrator.h\nindex be88c24c8e..964624ee0b 100644\n--- a/plugins/drude/tests/TestDrudeLangevinIntegrator.h\n+++ b/plugins/drude/tests/TestDrudeLangevinIntegrator.h\n@@ -84,7 +84,9 @@ void testSingleP... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3522 | multi_swe_bench | Use hex for large atom and residue IDs in PDB files (openmm/openmm#3522) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3522,
"issue_title": "Use hex for large atom and residue IDs in PDB files",
"issue_body": "Fixes #3501. This is the format used by VMD. When an atom ID passes 99999 or a residue ID passes 9999, it switches to hex.\r\n\r\ncc @billswope @swails",
"base_commi... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3522",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/internal/pdbstructure.py b/wrappers/python/openmm/app/internal/pdbstructure.py\nindex 2e26462546..3711ee2bfb 100644\n--- a/wrappers/python/openmm/app/internal/pdbstructure.py\n+++ b/wrappers/python/openmm/app/internal/pdbstructure.py\n@@ -164,10 +164,10 @@ def _... | {
"test_patch": "diff --git a/wrappers/python/tests/TestPdbFile.py b/wrappers/python/tests/TestPdbFile.py\nindex 5da9f09a63..efa197a26c 100644\n--- a/wrappers/python/tests/TestPdbFile.py\n+++ b/wrappers/python/tests/TestPdbFile.py\n@@ -94,6 +94,45 @@ def test_AltLocs(self):\n self.assertEqual(19, len(pdb.... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3614 | multi_swe_bench | Added temperature adjustment to MC barostat for simulated tempering (openmm/openmm#3614) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3614,
"issue_title": "Added temperature adjustment to MC barostat for simulated tempering",
"issue_body": "The title more or less explains it all:\r\nThis pull request allows simulated tempering to be run in isobaric ensembles using Monte Carlo barostats by ad... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3614",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/simulatedtempering.py b/wrappers/python/openmm/app/simulatedtempering.py\nindex 57158241aa..1451b69b91 100644\n--- a/wrappers/python/openmm/app/simulatedtempering.py\n+++ b/wrappers/python/openmm/app/simulatedtempering.py\n@@ -160,6 +160,9 @@ def __init__(self, ... | {
"test_patch": "diff --git a/wrappers/python/tests/TestSimulatedTempering.py b/wrappers/python/tests/TestSimulatedTempering.py\nindex 82d7c95284..716bab91b1 100644\n--- a/wrappers/python/tests/TestSimulatedTempering.py\n+++ b/wrappers/python/tests/TestSimulatedTempering.py\n@@ -52,4 +52,49 @@ def testHarmonicOscilla... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3711 | multi_swe_bench | CustomCVForce avoids breaking up molecules (openmm/openmm#3711) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3711,
"issue_title": "CustomCVForce avoids breaking up molecules",
"issue_body": "This might or might not be the fix for https://github.com/openmm/openmm-ml/issues/36. Each Force object reports what atoms it creates bonds between, so all the atoms in a molecu... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3711",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/openmmapi/include/openmm/internal/CustomCVForceImpl.h b/openmmapi/include/openmm/internal/CustomCVForceImpl.h\nindex c0372114d6..01e69a8b45 100644\n--- a/openmmapi/include/openmm/internal/CustomCVForceImpl.h\n+++ b/openmmapi/include/openmm/internal/CustomCVForceImpl.h\n@@ -9,7 +9,7 @@\n ... | {
"test_patch": "diff --git a/tests/TestCustomCVForce.h b/tests/TestCustomCVForce.h\nindex 33cc8457d6..f4bd380f96 100644\n--- a/tests/TestCustomCVForce.h\n+++ b/tests/TestCustomCVForce.h\n@@ -6,7 +6,7 @@\n * Biological Structures at Stanford, funded under the NIH Roadmap for *\n * Medical Research, grant U54... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3760 | multi_swe_bench | Add SWM4-NDP water to modeller.addSolvent() (openmm/openmm#3760) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3760,
"issue_title": "Add SWM4-NDP water to modeller.addSolvent()",
"issue_body": "Hi all,\r\n\r\nI opened issue #3415 earlier this year regarding the inability to load a pdb of a protein and then use OpenMM to solvate the system with this water for use with p... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3760",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/data/swm4ndp.pdb b/wrappers/python/openmm/app/data/swm4ndp.pdb\nnew file mode 100644\nindex 0000000000..c3e683130d\n--- /dev/null\n+++ b/wrappers/python/openmm/app/data/swm4ndp.pdb\n@@ -0,0 +1,4479 @@\n+REMARK 1 CREATED WITH OPENMM 7.6, 2022-08-30\n+CRYST1 3... | {
"test_patch": "diff --git a/wrappers/python/tests/TestModeller.py b/wrappers/python/tests/TestModeller.py\nindex 06906afe30..1f29bc9951 100644\n--- a/wrappers/python/tests/TestModeller.py\n+++ b/wrappers/python/tests/TestModeller.py\n@@ -264,7 +264,7 @@ def test_addSolventWaterModels(self):\n \n topology_st... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3769 | multi_swe_bench | Clarified multiple forces with the same global parameter (openmm/openmm#3769) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3769,
"issue_title": "Clarified multiple forces with the same global parameter",
"issue_body": "Fixes #3768. I added documentation to clarify this case, and also made the Context throw an exception if two forces define global parameters with the same name but... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3769",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/docs-source/usersguide/theory/03_custom_forces.rst b/docs-source/usersguide/theory/03_custom_forces.rst\nindex 17fbfdddc8..201bf9e5d9 100644\n--- a/docs-source/usersguide/theory/03_custom_forces.rst\n+++ b/docs-source/usersguide/theory/03_custom_forces.rst\n@@ -465,6 +465,13 @@ example, i... | {
"test_patch": "diff --git a/tests/TestCustomBondForce.h b/tests/TestCustomBondForce.h\nindex 16f83a3d59..e63e96f8a6 100644\n--- a/tests/TestCustomBondForce.h\n+++ b/tests/TestCustomBondForce.h\n@@ -6,7 +6,7 @@\n * Biological Structures at Stanford, funded under the NIH Roadmap for *\n * Medical Research, g... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3791 | multi_swe_bench | Fix #3790: Collision rate for MTS BAOAB Langevin integrator now correctly accounts for number of substeps (openmm/openmm#3791) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3791,
"issue_title": "Fix #3790: Collision rate for MTS BAOAB Langevin integrator now correctly accounts for number of substeps",
"issue_body": "Previously, `openmm.MTSLangevinIntegrator` would use an effective collision rate that is too large when there were ... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3791",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/mtsintegrator.py b/wrappers/python/openmm/mtsintegrator.py\nindex dcae295562..5014e31a36 100644\n--- a/wrappers/python/openmm/mtsintegrator.py\n+++ b/wrappers/python/openmm/mtsintegrator.py\n@@ -167,8 +167,9 @@ def __init__(self, temperature, friction, dt, groups):\... | {
"test_patch": "diff --git a/wrappers/python/tests/TestIntegrators.py b/wrappers/python/tests/TestIntegrators.py\nindex 03291e06ce..07a27bae43 100644\n--- a/wrappers/python/tests/TestIntegrators.py\n+++ b/wrappers/python/tests/TestIntegrators.py\n@@ -137,7 +137,7 @@ def testMTSLangevinIntegrator(self):\n ... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3819 | multi_swe_bench | Add OPC and OPC3 ion sets (openmm/openmm#3819) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3819,
"issue_title": "Add OPC and OPC3 ion sets",
"issue_body": "Make merged xml files from `opc*xml` and `ions/ionslm_126_opc*.xml` from https://github.com/openmm/openmmforcefields/commit/b12c2e871b60275a10b3f8f56dfc2f6d5447591f",
"base_commit": "c19b6d938a... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3819",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/docs-source/usersguide/application/02_running_sims.rst b/docs-source/usersguide/application/02_running_sims.rst\nindex a06afc52d7..b984e53d56 100644\n--- a/docs-source/usersguide/application/02_running_sims.rst\n+++ b/docs-source/usersguide/application/02_running_sims.rst\n@@ -505,6 +505,... | {
"test_patch": "diff --git a/wrappers/python/tests/TestForceField.py b/wrappers/python/tests/TestForceField.py\nindex 899f0393ea..767c7793d6 100644\n--- a/wrappers/python/tests/TestForceField.py\n+++ b/wrappers/python/tests/TestForceField.py\n@@ -1325,6 +1325,13 @@ def test_Opc3Energy(self):\n # -2532.486208... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr3886 | multi_swe_bench | Minimizer does not move constrained massless particles (openmm/openmm#3886) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 3886,
"issue_title": "Minimizer does not move constrained massless particles",
"issue_body": "Fixes #3884. This addresses an obscure situation. Normally we don't allow a constraint to involve a massless particle. But if both particles connected by a constra... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-3886",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/openmmapi/src/LocalEnergyMinimizer.cpp b/openmmapi/src/LocalEnergyMinimizer.cpp\nindex 503f45a3d0..4fba9540a9 100644\n--- a/openmmapi/src/LocalEnergyMinimizer.cpp\n+++ b/openmmapi/src/LocalEnergyMinimizer.cpp\n@@ -137,12 +137,16 @@ static lbfgsfloatval_t evaluate(void *instance, const lbf... | {
"test_patch": "diff --git a/tests/TestLocalEnergyMinimizer.h b/tests/TestLocalEnergyMinimizer.h\nindex 8fb3bbba3e..f28fb57e0f 100644\n--- a/tests/TestLocalEnergyMinimizer.h\n+++ b/tests/TestLocalEnergyMinimizer.h\n@@ -259,6 +259,42 @@ void testForceGroups() {\n ASSERT_EQUAL_TOL(2.0, sqrt(delta.dot(delta)), 1e-4... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4094 | multi_swe_bench | AmberPrmtopFile accepts box vectors as a constructor argument (openmm/openmm#4094) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4094,
"issue_title": "AmberPrmtopFile accepts box vectors as a constructor argument",
"issue_body": "See #4078 for a discussion of the problems this solves.",
"base_commit": "f08a1cf8ee42ff42dae1d2d72c2a207805cd2df8",
"resolved_issues": [
{
"numb... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4094",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/docs-source/usersguide/application/02_running_sims.rst b/docs-source/usersguide/application/02_running_sims.rst\nindex 080634d2b5..5605a1dedb 100644\n--- a/docs-source/usersguide/application/02_running_sims.rst\n+++ b/docs-source/usersguide/application/02_running_sims.rst\n@@ -190,7 +190,... | {
"test_patch": "diff --git a/wrappers/python/tests/TestAmberPrmtopFile.py b/wrappers/python/tests/TestAmberPrmtopFile.py\nindex b107e9dede..aa190d4b64 100644\n--- a/wrappers/python/tests/TestAmberPrmtopFile.py\n+++ b/wrappers/python/tests/TestAmberPrmtopFile.py\n@@ -7,16 +7,16 @@\n from openmm.unit import *\n import... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4168 | multi_swe_bench | Fix "off by one" error in xtc time reporting. (openmm/openmm#4168) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4168,
"issue_title": "Fix \"off by one\" error in xtc time reporting.",
"issue_body": "Fixes #4163.\r\nBoth the reporter and the tests expected the first step to have index 1, causing the time of the first step to be assigned the time `dt` instead of 0.\r\n\r\... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4168",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/xtcfile.py b/wrappers/python/openmm/app/xtcfile.py\nindex ab5ff5b93a..1cdd6d7e63 100644\n--- a/wrappers/python/openmm/app/xtcfile.py\n+++ b/wrappers/python/openmm/app/xtcfile.py\n@@ -141,7 +141,7 @@ def writeModel(self, positions, unitCellDimensions=None, period... | {
"test_patch": "diff --git a/wrappers/python/tests/TestXtcFile.py b/wrappers/python/tests/TestXtcFile.py\nindex c33c65d047..1b84104205 100644\n--- a/wrappers/python/tests/TestXtcFile.py\n+++ b/wrappers/python/tests/TestXtcFile.py\n@@ -49,9 +49,9 @@ def test_xtc_triclinic(self):\n box = np.array(box).tran... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4219 | multi_swe_bench | Don't add extra bond between water hydrogens (openmm/openmm#4219) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4219,
"issue_title": "Don't add extra bond between water hydrogens",
"issue_body": "Fixes #4212.\r\n\r\nAmber files list an extra \"bond\" between the hydrogens of a water molecule, which was incorrectly included in the Topology built from a prmtop file. A To... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4219",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/amberprmtopfile.py b/wrappers/python/openmm/app/amberprmtopfile.py\nindex d01a590d9a..250d4438a1 100644\n--- a/wrappers/python/openmm/app/amberprmtopfile.py\n+++ b/wrappers/python/openmm/app/amberprmtopfile.py\n@@ -160,7 +160,13 @@ def __init__(self, file, perio... | {
"test_patch": "diff --git a/wrappers/python/tests/TestAmberPrmtopFile.py b/wrappers/python/tests/TestAmberPrmtopFile.py\nindex aa190d4b64..f25a1e6cfa 100644\n--- a/wrappers/python/tests/TestAmberPrmtopFile.py\n+++ b/wrappers/python/tests/TestAmberPrmtopFile.py\n@@ -78,12 +78,14 @@ def test_RigidWaterAndConstraints(... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4231 | multi_swe_bench | CustomCPPForceImpl for writing forces in C++ (openmm/openmm#4231) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4231,
"issue_title": "CustomCPPForceImpl for writing forces in C++",
"issue_body": "This is a new piece of infrastructure. It allows you to implement a new force by writing a single implementation in platform-independent C++. This is mainly intended for plug... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4231",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/docs-source/developerguide/09_customcppforceimpl.rst b/docs-source/developerguide/09_customcppforceimpl.rst\nnew file mode 100644\nindex 0000000000..9c6bccb48e\n--- /dev/null\n+++ b/docs-source/developerguide/09_customcppforceimpl.rst\n@@ -0,0 +1,52 @@\n+.. role:: code\n+.. raw:: html\n+\... | {
"test_patch": "diff --git a/platforms/cpu/tests/TestCpuCustomCPPForce.cpp b/platforms/cpu/tests/TestCpuCustomCPPForce.cpp\nnew file mode 100644\nindex 0000000000..aa4c42ea68\n--- /dev/null\n+++ b/platforms/cpu/tests/TestCpuCustomCPPForce.cpp\n@@ -0,0 +1,37 @@\n+/* ---------------------------------------------------... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4317 | multi_swe_bench | Serialization proxy for ATMForce did not record the particles (openmm/openmm#4317) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4317,
"issue_title": "Serialization proxy for ATMForce did not record the particles",
"issue_body": "Fixes #4316.",
"base_commit": "31abb2f7a34e8ef5c17bc52207fb0d226bf5d703",
"resolved_issues": [
{
"number": 4316,
"title": "`ATMForce` SIGSE... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4317",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/serialization/src/ATMForceProxy.cpp b/serialization/src/ATMForceProxy.cpp\nindex d86cbd4a50..75d70fb6f8 100644\n--- a/serialization/src/ATMForceProxy.cpp\n+++ b/serialization/src/ATMForceProxy.cpp\n@@ -60,6 +60,13 @@ void ATMForceProxy::serialize(const void* object, SerializationNode& nod... | {
"test_patch": "diff --git a/serialization/tests/TestSerializeATMForce.cpp b/serialization/tests/TestSerializeATMForce.cpp\nindex e55f2fe5f4..641ff0d46a 100644\n--- a/serialization/tests/TestSerializeATMForce.cpp\n+++ b/serialization/tests/TestSerializeATMForce.cpp\n@@ -55,6 +55,8 @@ void testSerialization() {\n ... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4319 | multi_swe_bench | Fixes to Python API for ATMForce (openmm/openmm#4319) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4319,
"issue_title": "Fixes to Python API for ATMForce",
"issue_body": "Fixes #4313.",
"base_commit": "2ab3b77d946cf5d9b705d3d3b4edd96314d62aa5",
"resolved_issues": [
{
"number": 4313,
"title": "`ATMForce.getParticleParameters` python wrapp... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4319",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/src/swig_doxygen/swigInputConfig.py b/wrappers/python/src/swig_doxygen/swigInputConfig.py\nindex 24b598ae98..4c110b7be8 100755\n--- a/wrappers/python/src/swig_doxygen/swigInputConfig.py\n+++ b/wrappers/python/src/swig_doxygen/swigInputConfig.py\n@@ -521,4 +521,5 @@\n (\"AT... | {
"test_patch": "diff --git a/wrappers/python/tests/TestAPIUnits.py b/wrappers/python/tests/TestAPIUnits.py\nindex f2d0deedff..d7e75f8bad 100644\n--- a/wrappers/python/tests/TestAPIUnits.py\n+++ b/wrappers/python/tests/TestAPIUnits.py\n@@ -526,6 +526,23 @@ def testCustomManyParticleForce(self):\n self.assertE... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4323 | multi_swe_bench | Preserve bond type and order in all `Modeller` operations (openmm/openmm#4323) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4323,
"issue_title": "Preserve bond type and order in all `Modeller` operations",
"issue_body": "This is not linked to an open issue (as far as I can tell), but it falls in the same category as #4112 (issue), #4113 (PR), completing the work of the latter. \r\n... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4323",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/modeller.py b/wrappers/python/openmm/app/modeller.py\nindex 997e0f53b1..1cc5299fbe 100644\n--- a/wrappers/python/openmm/app/modeller.py\n+++ b/wrappers/python/openmm/app/modeller.py\n@@ -178,7 +178,7 @@ def delete(self, toDelete):\n for bond in self.topo... | {
"test_patch": "diff --git a/wrappers/python/tests/TestModeller.py b/wrappers/python/tests/TestModeller.py\nindex 1f29bc9951..16e5837418 100644\n--- a/wrappers/python/tests/TestModeller.py\n+++ b/wrappers/python/tests/TestModeller.py\n@@ -1200,6 +1200,75 @@ def test_addMembrane(self):\n for i in range(3):\n ... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4523 | multi_swe_bench | DrudeForce supports periodic boundary conditions (openmm/openmm#4523) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4523,
"issue_title": "DrudeForce supports periodic boundary conditions",
"issue_body": "Fixes #4521.",
"base_commit": "2d4372d7ba8de7e02b4af9cb57f4ef29cd146f34",
"resolved_issues": [
{
"number": 4521,
"title": "Periodic boundary conditions ... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4523",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/plugins/drude/openmmapi/include/openmm/DrudeForce.h b/plugins/drude/openmmapi/include/openmm/DrudeForce.h\nindex 0ae8980b95..c4483c4331 100644\n--- a/plugins/drude/openmmapi/include/openmm/DrudeForce.h\n+++ b/plugins/drude/openmmapi/include/openmm/DrudeForce.h\n@@ -9,7 +9,7 @@\n * Biolog... | {
"test_patch": "diff --git a/plugins/drude/tests/TestDrudeForce.h b/plugins/drude/tests/TestDrudeForce.h\nindex 67e47d06fc..67eef4ffa3 100644\n--- a/plugins/drude/tests/TestDrudeForce.h\n+++ b/plugins/drude/tests/TestDrudeForce.h\n@@ -6,7 +6,7 @@\n * Biological Structures at Stanford, funded under the NIH Roadmap f... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4528 | multi_swe_bench | Fixed errors with residueTemplates arguments to Modeller methods (openmm/openmm#4528) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4528,
"issue_title": "Fixed errors with residueTemplates arguments to Modeller methods",
"issue_body": "Fixes #4524.",
"base_commit": "3cb6f8d709d720fefbe4aa21f1e6fc2afd69590d",
"resolved_issues": [
{
"number": 4524,
"title": "modeller.addS... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4528",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/modeller.py b/wrappers/python/openmm/app/modeller.py\nindex fc30c0dbe5..0e9917bb26 100644\n--- a/wrappers/python/openmm/app/modeller.py\n+++ b/wrappers/python/openmm/app/modeller.py\n@@ -6,7 +6,7 @@\n Biological Structures at Stanford, funded under the NIH Roadm... | {
"test_patch": "diff --git a/wrappers/python/tests/TestModeller.py b/wrappers/python/tests/TestModeller.py\nindex 16e5837418..a695da8965 100644\n--- a/wrappers/python/tests/TestModeller.py\n+++ b/wrappers/python/tests/TestModeller.py\n@@ -1270,6 +1270,49 @@ def test_bondTypeAndOrderPreserved(self):\n {(N... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4585 | multi_swe_bench | addHydrogens() allows specifying exactly what hydrogens to add (openmm/openmm#4585) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4585,
"issue_title": "addHydrogens() allows specifying exactly what hydrogens to add",
"issue_body": "When calling `addHydrogens()`, there is a new option to specify exactly what hydrogens should be present for a residue. This is needed for some new features ... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4585",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/devtools/ci/gh-actions/conda-envs/build-M1-arm64.yml b/devtools/ci/gh-actions/conda-envs/build-M1-arm64.yml\nindex 73cb8a381c..de06102613 100644\n--- a/devtools/ci/gh-actions/conda-envs/build-M1-arm64.yml\n+++ b/devtools/ci/gh-actions/conda-envs/build-M1-arm64.yml\n@@ -10,7 +10,7 @@ depen... | {
"test_patch": "diff --git a/devtools/ci/gh-actions/conda-envs/build-macos-latest.yml b/devtools/ci/gh-actions/conda-envs/build-macos-latest.yml\nindex ce3ca8767b..b474f295a9 100644\n--- a/devtools/ci/gh-actions/conda-envs/build-macos-latest.yml\n+++ b/devtools/ci/gh-actions/conda-envs/build-macos-latest.yml\n@@ -10... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4630 | multi_swe_bench | Fix formal charge reading from pdb files; store formal charges in topology (openmm/openmm#4630) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4630,
"issue_title": "Fix formal charge reading from pdb files; store formal charges in topology",
"issue_body": "This pull request fixes some bugs with formal charge handling in pdb files, and also stores the charges in the resulting topologies.\r\n\r\nHow ch... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4630",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/internal/pdbstructure.py b/wrappers/python/openmm/app/internal/pdbstructure.py\nindex 3711ee2bfb..aa81838fa4 100644\n--- a/wrappers/python/openmm/app/internal/pdbstructure.py\n+++ b/wrappers/python/openmm/app/internal/pdbstructure.py\n@@ -785,8 +785,15 @@ def __... | {
"test_patch": "diff --git a/wrappers/python/tests/TestPdbFile.py b/wrappers/python/tests/TestPdbFile.py\nindex 69bdbd901f..430ce3b048 100644\n--- a/wrappers/python/tests/TestPdbFile.py\n+++ b/wrappers/python/tests/TestPdbFile.py\n@@ -105,6 +105,28 @@ def test_AltLocs(self):\n self.assertEqual(19, len(pd... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4641 | multi_swe_bench | Serializing CustomIntegrator preserves order of global variables (openmm/openmm#4641) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4641,
"issue_title": "Serializing CustomIntegrator preserves order of global variables",
"issue_body": "Fixes #4637.\r\n\r\nWhen serializing a CustomIntegrator, it recorded the global variables as attributes on a single XML tag. That doesn't preserve order, s... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4641",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/serialization/src/CustomIntegratorProxy.cpp b/serialization/src/CustomIntegratorProxy.cpp\nindex b1ecf26fd2..86ab647835 100644\n--- a/serialization/src/CustomIntegratorProxy.cpp\n+++ b/serialization/src/CustomIntegratorProxy.cpp\n@@ -6,7 +6,7 @@\n * Biological Structures at Stanford, fun... | {
"test_patch": "diff --git a/serialization/tests/TestSerializeIntegrator.cpp b/serialization/tests/TestSerializeIntegrator.cpp\nindex d24fe4f74d..2663de097a 100644\n--- a/serialization/tests/TestSerializeIntegrator.cpp\n+++ b/serialization/tests/TestSerializeIntegrator.cpp\n@@ -6,7 +6,7 @@\n * Biological Structures... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4647 | multi_swe_bench | Updates to AmoebaVdwForce, AmoebaGeneralizedKirkwoodForce and AmoebaWcaDispersionForce (openmm/openmm#4647) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4647,
"issue_title": "Updates to AmoebaVdwForce, AmoebaGeneralizedKirkwoodForce and AmoebaWcaDispersionForce",
"issue_body": "The updates to the AmoebaGeneralizedKirkwoodForce and AmoebaWcaDispersionForce will align OpenMM with recent updates to the correspond... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4647",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h b/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h\nindex b258f4eb05..af52935cac 100644\n--- a/plugins/amoeba/openmmapi/include/openmm/AmoebaGeneralizedKirkwoodForce.h\n+++ b/plugins/amoeba/op... | {
"test_patch": "diff --git a/plugins/amoeba/serialization/tests/TestSerializeAmoebaGeneralizedKirkwoodForce.cpp b/plugins/amoeba/serialization/tests/TestSerializeAmoebaGeneralizedKirkwoodForce.cpp\nindex 4447c9fd5f..0a8a1a57f4 100644\n--- a/plugins/amoeba/serialization/tests/TestSerializeAmoebaGeneralizedKirkwoodFor... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4671 | multi_swe_bench | Increase describeNextReport readability and allow requesting more values (openmm/openmm#4671) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4671,
"issue_title": "Increase describeNextReport readability and allow requesting more values",
"issue_body": "Fixes #4663 \r\nAlso harmonizes _generate_reports with #4437 \r\n\r\ndescribeNextReport can now return a dict instead of a tuple with the format\r\n... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4671",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/docs-source/usersguide/application/04_advanced_sim_examples.rst b/docs-source/usersguide/application/04_advanced_sim_examples.rst\nindex 88e550caf3..88f49959e3 100644\n--- a/docs-source/usersguide/application/04_advanced_sim_examples.rst\n+++ b/docs-source/usersguide/application/04_advanc... | {
"test_patch": "diff --git a/wrappers/python/tests/TestSimulation.py b/wrappers/python/tests/TestSimulation.py\nindex aa26895634..68ba979670 100644\n--- a/wrappers/python/tests/TestSimulation.py\n+++ b/wrappers/python/tests/TestSimulation.py\n@@ -179,7 +179,7 @@ def __init__(self, periodic):\n \n ... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4732 | multi_swe_bench | updateParametersInContext() can modify parameter offsets (openmm/openmm#4732) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4732,
"issue_title": "updateParametersInContext() can modify parameter offsets",
"issue_body": "Fixes #4724.",
"base_commit": "027fed2a57a55b1e0c74dad3e8d565dd3d5be1e7",
"resolved_issues": [
{
"number": 4724,
"title": "Update offset paramet... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4732",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/openmmapi/include/openmm/NonbondedForce.h b/openmmapi/include/openmm/NonbondedForce.h\nindex f320b611ce..cec596e28d 100644\n--- a/openmmapi/include/openmm/NonbondedForce.h\n+++ b/openmmapi/include/openmm/NonbondedForce.h\n@@ -572,11 +572,13 @@ class OPENMM_EXPORT NonbondedForce : public F... | {
"test_patch": "diff --git a/tests/TestNonbondedForce.h b/tests/TestNonbondedForce.h\nindex 1efaefdfde..e1d5aed87d 100644\n--- a/tests/TestNonbondedForce.h\n+++ b/tests/TestNonbondedForce.h\n@@ -901,6 +901,39 @@ void testParameterOffsets() {\n energy += ONE_4PI_EPS0*pairChargeProd[i][j]/dist + 4.0*pairEp... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4734 | multi_swe_bench | Serialization records integration force groups (openmm/openmm#4734) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4734,
"issue_title": "Serialization records integration force groups",
"issue_body": "Fixes #4730.\r\n\r\nWhile fixing this, I realized our handling of force groups for CompoundIntegrator was inconsistent. The CompoundIntegrator stored a list of force groups,... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4734",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/openmmapi/include/openmm/CompoundIntegrator.h b/openmmapi/include/openmm/CompoundIntegrator.h\nindex 3839648988..dea22f1fbc 100644\n--- a/openmmapi/include/openmm/CompoundIntegrator.h\n+++ b/openmmapi/include/openmm/CompoundIntegrator.h\n@@ -9,7 +9,7 @@\n * Biological Structures at Stanf... | {
"test_patch": "diff --git a/plugins/drude/serialization/tests/TestSerializeDrudeLangevinIntegrator.cpp b/plugins/drude/serialization/tests/TestSerializeDrudeLangevinIntegrator.cpp\nindex d11e4f4fca..df366aabce 100644\n--- a/plugins/drude/serialization/tests/TestSerializeDrudeLangevinIntegrator.cpp\n+++ b/plugins/dr... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4741 | multi_swe_bench | Added atomSubset option to DCDReporter and XTCReporter (openmm/openmm#4741) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4741,
"issue_title": "Added atomSubset option to DCDReporter and XTCReporter",
"issue_body": "When saving a trajectory to a DCD or XTC file, you can specify a subset of atoms to write. Fixes #4564.",
"base_commit": "9fe1bae6efa18a55994522a8aac4f24338a2894e"... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4741",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/dcdfile.py b/wrappers/python/openmm/app/dcdfile.py\nindex 53aeaafec6..335cdc0b79 100644\n--- a/wrappers/python/openmm/app/dcdfile.py\n+++ b/wrappers/python/openmm/app/dcdfile.py\n@@ -88,14 +88,14 @@ def __init__(self, file, topology, dt, firstStep=0, interval=1,... | {
"test_patch": "diff --git a/wrappers/python/tests/TestDcdFile.py b/wrappers/python/tests/TestDcdFile.py\nindex 73af629eff..1ce1cbdeaf 100644\n--- a/wrappers/python/tests/TestDcdFile.py\n+++ b/wrappers/python/tests/TestDcdFile.py\n@@ -66,6 +66,44 @@ def testAppend(self):\n del dcd\n os.remove(fname)\... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4767 | multi_swe_bench | Cleaner printing of units (openmm/openmm#4767) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4767,
"issue_title": "Cleaner printing of units",
"issue_body": "This changes the default string representation of Quantities to print values with units in a simpler form. With the current code:\r\n\r\n```python\r\n>>> 1.5*nanometers\r\nQuantity(value=1.5, un... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4767",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/unit/quantity.py b/wrappers/python/openmm/unit/quantity.py\nindex d93283c7f9..0559c145cd 100644\n--- a/wrappers/python/openmm/unit/quantity.py\n+++ b/wrappers/python/openmm/unit/quantity.py\n@@ -215,8 +215,7 @@ def __str__(self):\n def __repr__(self):\n ... | {
"test_patch": "diff --git a/wrappers/python/tests/TestUnits.py b/wrappers/python/tests/TestUnits.py\nindex 5bbda4fb66..9c7712db8d 100644\n--- a/wrappers/python/tests/TestUnits.py\n+++ b/wrappers/python/tests/TestUnits.py\n@@ -630,7 +630,7 @@ def testMisc(self):\n \"\"\" Miscellaneous tests for the unit pack... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4794 | multi_swe_bench | Fixes precision mismatch when appending to an XTC file with 9 atoms or less (openmm/openmm#4794) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4794,
"issue_title": "Fixes precision mismatch when appending to an XTC file with 9 atoms or less",
"issue_body": "Should fix #4793. Note that this issue in the reading code is triggered by attempting to append to an XTC because the XTC writer reads before ap... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4794",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/internal/xtc_utils/src/xtc.cpp b/wrappers/python/openmm/app/internal/xtc_utils/src/xtc.cpp\nindex 838e3709df..de65c83fef 100644\n--- a/wrappers/python/openmm/app/internal/xtc_utils/src/xtc.cpp\n+++ b/wrappers/python/openmm/app/internal/xtc_utils/src/xtc.cpp\n@@ ... | {
"test_patch": "diff --git a/wrappers/python/tests/TestXtcFile.py b/wrappers/python/tests/TestXtcFile.py\nindex a66c6a2a3f..dbbb93cc7a 100644\n--- a/wrappers/python/tests/TestXtcFile.py\n+++ b/wrappers/python/tests/TestXtcFile.py\n@@ -135,6 +135,48 @@ def test_xtc_box_from_topology(self):\n )\n ... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4795 | multi_swe_bench | Properly handle and test multiple registration of atom types without elements (openmm/openmm#4795) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4795,
"issue_title": "Properly handle and test multiple registration of atom types without elements",
"issue_body": "`ForceField` allows multiple atom type definitions with the same name if their parameters are identical and forbids them if they differ. `regi... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4795",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml\nindex f5b240ee6b..decb51552c 100644\n--- a/.github/workflows/CI.yml\n+++ b/.github/workflows/CI.yml\n@@ -212,7 +212,7 @@ jobs:\n ccache -z\n \n - name: \"Restore ccache\"\n- uses: actions/cache@v3.3.2\n+ us... | {
"test_patch": "diff --git a/wrappers/python/tests/TestForceField.py b/wrappers/python/tests/TestForceField.py\nindex 35707f05ec..e37ac7df08 100644\n--- a/wrappers/python/tests/TestForceField.py\n+++ b/wrappers/python/tests/TestForceField.py\n@@ -379,6 +379,156 @@ def test_PeriodicBoxVectors(self):\n sel... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4830 | multi_swe_bench | Check all wildcard combinations for dihedrals and impropers (openmm/openmm#4830) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4830,
"issue_title": "Check all wildcard combinations for dihedrals and impropers",
"issue_body": "Addresses #4828. Allows up to 3 wildcards in any positions for dihedrals and impropers. 4 out of 4 wildcards in a parameter file shouldn't happen so that isn't... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4830",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/charmmpsffile.py b/wrappers/python/openmm/app/charmmpsffile.py\nindex ab57331c97..46f9a176ac 100644\n--- a/wrappers/python/openmm/app/charmmpsffile.py\n+++ b/wrappers/python/openmm/app/charmmpsffile.py\n@@ -34,6 +34,7 @@\n from __future__ import division, absolu... | {
"test_patch": "diff --git a/wrappers/python/tests/TestCharmmFiles.py b/wrappers/python/tests/TestCharmmFiles.py\nindex ebf24874d9..7ac43e13a4 100644\n--- a/wrappers/python/tests/TestCharmmFiles.py\n+++ b/wrappers/python/tests/TestCharmmFiles.py\n@@ -4,6 +4,7 @@\n from openmm import *\n from openmm.unit import *\n i... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4832 | multi_swe_bench | flexibleConstraints option for AmberPrmtopFile (openmm/openmm#4832) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4832,
"issue_title": "flexibleConstraints option for AmberPrmtopFile",
"issue_body": "Fixes #4827.",
"base_commit": "91966dc8eb976fadc206e8a345470a737c09fd8b",
"resolved_issues": [
{
"number": 4827,
"title": "Why no flexibleConstraints opti... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4832",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/amberprmtopfile.py b/wrappers/python/openmm/app/amberprmtopfile.py\nindex 84dac43b55..5512a19918 100644\n--- a/wrappers/python/openmm/app/amberprmtopfile.py\n+++ b/wrappers/python/openmm/app/amberprmtopfile.py\n@@ -6,7 +6,7 @@\n Biological Structures at Stanford... | {
"test_patch": "diff --git a/wrappers/python/tests/TestAmberPrmtopFile.py b/wrappers/python/tests/TestAmberPrmtopFile.py\nindex 0e7d7da3bf..5f8678542d 100644\n--- a/wrappers/python/tests/TestAmberPrmtopFile.py\n+++ b/wrappers/python/tests/TestAmberPrmtopFile.py\n@@ -7,6 +7,7 @@\n from openmm.unit import *\n import o... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4852 | multi_swe_bench | Correctly assign CMAPs to torsions across multiple CMAPTorsionForce sections (openmm/openmm#4852) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4852,
"issue_title": "Correctly assign CMAPs to torsions across multiple CMAPTorsionForce sections",
"issue_body": "Should fix #4850. Adds a test that would have caught the issue.",
"base_commit": "dde4228b337b7494e23ec913f4dc65f16fee6d08",
"resolved_issu... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4852",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/forcefield.py b/wrappers/python/openmm/app/forcefield.py\nindex a222355f85..79f21f22ab 100644\n--- a/wrappers/python/openmm/app/forcefield.py\n+++ b/wrappers/python/openmm/app/forcefield.py\n@@ -2392,6 +2392,7 @@ def parseElement(element, ff):\n ff.r... | {
"test_patch": "diff --git a/wrappers/python/tests/TestForceField.py b/wrappers/python/tests/TestForceField.py\nindex e37ac7df08..3b0376bf95 100644\n--- a/wrappers/python/tests/TestForceField.py\n+++ b/wrappers/python/tests/TestForceField.py\n@@ -1006,6 +1006,100 @@ def test_ResidueOverriding(self):\n self.a... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4875 | multi_swe_bench | Attempting to fix XTC/DCD restarting (openmm/openmm#4875) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4875,
"issue_title": "Attempting to fix XTC/DCD restarting",
"issue_body": "Fixes #4873 by writing directly the simulation.currentStep into the XTC and DCD files.\r\n\r\nI'm making here some assumptions that the first step written in a file will be at `step=in... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4875",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/dcdfile.py b/wrappers/python/openmm/app/dcdfile.py\nindex 335cdc0b79..c886527da9 100644\n--- a/wrappers/python/openmm/app/dcdfile.py\n+++ b/wrappers/python/openmm/app/dcdfile.py\n@@ -75,7 +75,6 @@ def __init__(self, file, topology, dt, firstStep=0, interval=1, a... | {
"test_patch": "diff --git a/wrappers/python/tests/TestDcdFile.py b/wrappers/python/tests/TestDcdFile.py\nindex 1ce1cbdeaf..a2bd280bce 100644\n--- a/wrappers/python/tests/TestDcdFile.py\n+++ b/wrappers/python/tests/TestDcdFile.py\n@@ -6,6 +6,13 @@\n from random import random\n import os\n \n+def _readModelCount(file... | {
"scoring_method": "binary",
"resolve_points": 100
} |
MSB_openmm_openmm_pr4879 | multi_swe_bench | Fixing XTC/DCD time and step writing (openmm/openmm#4879) | {
"org": "openmm",
"repo": "openmm",
"pr_number": 4879,
"issue_title": "Fixing XTC/DCD time and step writing",
"issue_body": "Fixes https://github.com/openmm/openmm/issues/4873 ",
"base_commit": "adf1843f8d2bdcc8bcb32ebefa337d03d471a0ac",
"resolved_issues": [
{
"number": null,
"title": "Fi... | {
"env_type": "docker",
"docker_image": "mswebench/openmm_m_openmm:pr-4879",
"working_directory": "/testbed",
"needs_build": true
} | {
"fix_patch": "diff --git a/wrappers/python/openmm/app/dcdfile.py b/wrappers/python/openmm/app/dcdfile.py\nindex 335cdc0b79..af65894f62 100644\n--- a/wrappers/python/openmm/app/dcdfile.py\n+++ b/wrappers/python/openmm/app/dcdfile.py\n@@ -145,8 +145,7 @@ def writeModel(self, positions, unitCellDimensions=None, period... | {
"test_patch": "diff --git a/wrappers/python/tests/TestDcdFile.py b/wrappers/python/tests/TestDcdFile.py\nindex 1ce1cbdeaf..048da3af73 100644\n--- a/wrappers/python/tests/TestDcdFile.py\n+++ b/wrappers/python/tests/TestDcdFile.py\n@@ -6,6 +6,17 @@\n from random import random\n import os\n \n+\n+def _read_dcd_header(... | {
"scoring_method": "binary",
"resolve_points": 100
} |
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